Strain identifier
BacDive ID: 14974
Type strain:
Species: Streptomyces ambofaciens
Strain history: KCC S-0204 <-- J. Nüesch.
NCBI tax ID(s): 278992 (strain), 1889 (species)
General
@ref: 9237
BacDive-ID: 14974
DSM-Number: 40053
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces ambofaciens DSM 40053 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1889 | species |
278992 | strain |
strain history
@ref | history |
---|---|
9237 | <- E.B. Shirling, ISP <- R. Despois, 3486 |
67770 | KCC S-0204 <-- J. Nüesch. |
doi: 10.13145/bacdive14974.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces ambofaciens
- full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954 (Approved Lists 1980)
@ref: 9237
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces ambofaciens
full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954 emend. Nouioui et al. 2018
type strain: yes
Morphology
multimedia
- @ref: 9237
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40053.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9237 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9237 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18474 | positive | optimum | 28 | mesophilic |
9237 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
@ref | compound |
---|---|
9237 | spiramycin I |
9237 | spiramycin II |
9237 | spiramycin III |
9237 | spiramycin netropsin |
9237 | congocidin |
9237 | netropsin |
9237 | spiramycin I, II, III |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18474 | 17234 | glucose | + | |
18474 | 22599 | arabinose | + | |
18474 | 17992 | sucrose | + | |
18474 | 18222 | xylose | - | |
18474 | 17268 | myo-inositol | + | |
18474 | 29864 | mannitol | + | |
18474 | 28757 | fructose | + | |
18474 | 26546 | rhamnose | + | |
18474 | 16634 | raffinose | - | |
18474 | 62968 | cellulose | + | |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | metabolite | production | Chebi-ID |
---|---|---|---|
67770 | congocidin | yes | |
67770 | spiramycin | yes | |
68368 | acetoin | no | 15688 |
68368 | indole | no | 35581 |
68368 | hydrogen sulfide | no | 16136 |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18474 | + | + | + | + | + | + | - | - | - | + | + | - | + | - | + | + | + | + | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18474 | + | + | + | + | + | - | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location |
---|---|---|---|---|---|
9237 | soil | France | FRA | Europe | |
67770 | Soil | France | FRA | Europe | Péronne, Somme |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9237 | 1 | Risk group (German classification) |
18474 | 1 | German classification |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces ambofaciens strain DSM40053 16S-23S intergenic spacer region, partial sequence | AF363489 | 285 | ena | 1889 |
20218 | Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA A intergenic spacer, complete sequence | AY027681 | 306 | ena | 1889 |
20218 | Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA B intergenic spacer, complete sequence | AY027682 | 303 | ena | 1889 |
20218 | Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA C intergenic spacer, complete sequence | AY027683 | 299 | ena | 1889 |
20218 | Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA D intergenic spacer, complete sequence | AY027684 | 303 | ena | 1889 |
20218 | Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA E intergenic spacer, complete sequence | AY027685 | 301 | ena | 1889 |
20218 | Streptomyces ambofaciens ATCC23877 16S-23S ribosomal RNA F intergenic spacer, complete sequence | AY027686 | 300 | ena | 1889 |
20218 | Streptomyces ambofaciens rrnD gene cluster encoding 16S, 23S and 5S ribosomal RNAs | M27245 | 6379 | ena | 1889 |
20218 | Streptomyces ambofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4618 | D44269 | 121 | ena | 1889 |
20218 | Streptomyces ambofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12651 | AB184107 | 1469 | ena | 1889 |
20218 | Streptomyces ambofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12836 | AB184182 | 1464 | ena | 1889 |
9237 | Streptomyces ambofaciens ATCC 23877, complete genome | CP012382 | 8303940 | ena | 278992 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces ambofaciens ATCC 23877 | GCA_001267885 | complete | ncbi | 278992 |
66792 | Streptomyces ambofaciens ATCC 23877 | 278992.20 | plasmid | patric | 278992 |
66792 | Streptomyces ambofaciens ATCC 23877 | 278992.5 | complete | patric | 278992 |
66792 | Streptomyces ambofaciens ATCC 23877 | 2873063797 | complete | img | 278992 |
GC content
- @ref: 67770
- GC-content: 72.2
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.57 | no |
flagellated | no | 97.972 | no |
gram-positive | yes | 90.805 | no |
anaerobic | no | 99.303 | no |
halophile | no | 93.031 | no |
spore-forming | yes | 96.768 | no |
thermophile | no | 98.718 | yes |
glucose-util | yes | 89.665 | no |
aerobic | yes | 94.04 | no |
glucose-ferment | no | 86.609 | no |
External links
@ref: 9237
culture collection no.: DSM 40053, ATCC 23877, CBS 616.68, IFO 12836, ISP 5053, JCM 4204, NBRC 12836, RIA 1115, BCRC 11857, CECT 3101, CGMCC 4.1528, JCM 4618, KCTC 9111, NBIMCC 1863, NRRL B-2516
straininfo link
- @ref: 84084
- straininfo: 389373
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 7685475 | Ultraviolet light, mitomycin C and nitrous acid induce genetic instability in Streptomyces ambofaciens ATCC23877. | Volff JN, Vandewiele D, Simonet JM, Decaris B | Mutat Res | 10.1016/0027-5107(93)90008-4 | 1993 | Gene Rearrangement, *Genes, Bacterial/drug effects/radiation effects, Mitomycin/*pharmacology, *Mutation, Nitrous Acid/*pharmacology, SOS Response, Genetics, Streptomyces/drug effects/*genetics/radiation effects, *Ultraviolet Rays | |
Pathogenicity | 8277240 | Stimulation of genetic instability in Streptomyces ambofaciens ATCC 23877 by antibiotics that interact with DNA gyrase. | Volff JN, Vandewiele D, Simonet JM, Decaris B | J Gen Microbiol | 10.1099/00221287-139-11-2551 | 1993 | Anti-Bacterial Agents/*pharmacology, DNA Topoisomerases, Type II/*drug effects, DNA, Bacterial/*drug effects/genetics, Mutation, Phenotype, SOS Response, Genetics/drug effects, Streptomyces/*drug effects/genetics | Phenotype |
Phenotype | 9748511 | Generation of a genetic polymorphism in clonal populations of the bacterium Streptomyces ambofaciens: characterization of different mutator states. | Martin P, Dary A, Decaris B | Mutat Res | 10.1016/s0027-5107(98)00156-0 | 1998 | Chromosomes, Bacterial, DNA Repair, Mutation/*genetics, Phenotype, Pigmentation/genetics, *Polymorphism, Genetic, Restriction Mapping, Spores, Bacterial, Streptomyces/*genetics, Ultraviolet Rays | |
Genetics | 10592319 | Intraclonal polymorphism in the bacterium Streptomyces ambofaciens ATCC23877: evidence for a high degree of heterogeneity of the wild type clones. | Martin P, Dary A, Andre A, Fischer G, Leblond P, Decaris B | Mutat Res | 10.1016/s0027-5107(99)00149-9 | 1999 | Chromosomes, Bacterial/genetics, Cosmids, DNA Probes/genetics, DNA, Recombinant, *Genetic Heterogeneity, Genetic Markers, Pigments, Biological/deficiency/genetics, Polymorphism, Genetic/*genetics, Sequence Deletion, Streptomyces/*cytology/*genetics/growth & development | |
Enzymology | 12677359 | Spontaneous chromosome circularization and amplification of a new amplifiable unit of DNA belonging to the terminal inverted repeats in Streptomyces ambofaciens ATCC 23877. | Catakli S, Andrieux A, Leblond P, Decaris B, Dary A | Arch Microbiol | 10.1007/s00203-003-0534-7 | 2003 | Bacterial Proteins/metabolism, Chromosome Deletion, Chromosomes, Bacterial/*chemistry/*genetics, DNA Probes, DNA, Bacterial/*chemistry/genetics/metabolism, Electrophoresis, Gel, Pulsed-Field, Models, Genetic, Mutation, Pigments, Biological/chemistry, Ring Chromosomes, Streptomyces/*genetics/isolation & purification, Terminal Repeat Sequences | Metabolism |
Metabolism | 15774892 | Involvement of AlpV, a new member of the Streptomyces antibiotic regulatory protein family, in regulation of the duplicated type II polyketide synthase alp gene cluster in Streptomyces ambofaciens. | Aigle B, Pang X, Decaris B, Leblond P | J Bacteriol | 10.1128/JB.187.7.2491-2500.2005 | 2005 | Amino Acid Sequence, Anthraquinones/metabolism, Anti-Bacterial Agents/biosynthesis, Gene Expression Regulation, Bacterial/*physiology, *Genes, Regulator, Molecular Sequence Data, *Multigene Family, Mutation, Open Reading Frames, Pigments, Biological/biosynthesis, Polyketide Synthases/*genetics, Sequence Alignment, Sequence Homology, Amino Acid, Streptomyces/genetics/*metabolism, Transcription, Genetic | Genetics |
Metabolism | 15808936 | Sigma factor WhiG and its regulation constitute a target of a mutational phenomenon occurring during aerial mycelium growth in Streptomyces ambofaciens ATCC23877. | Catakli S, Andrieux A, Decaris B, Dary A | Res Microbiol | 10.1016/j.resmic.2004.12.001 | 2005 | Amino Acid Sequence, Bacterial Proteins/biosynthesis/genetics/metabolism, Base Sequence, Conjugation, Genetic, DNA-Binding Proteins/genetics, Electrophoresis, Gel, Pulsed-Field, Gene Expression Regulation, Developmental, Genetic Complementation Test, Microscopy, Electron, Scanning, Molecular Sequence Data, *Mutation, Mycelium/genetics/growth & development/metabolism, RNA, Bacterial/chemistry/genetics, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment, Sigma Factor/biosynthesis/*genetics/metabolism, Streptomyces/*genetics/growth & development/metabolism | Enzymology |
Genetics | 16388829 | Genetic instability of whiG gene during the aerial mycelium development of Streptomyces ambofaciens ATCC23877 under different conditions of nitrogen limitations. | Genay M, Catakli S, Kleinclauss A, Andrieux A, Decaris B, Dary A | Mutat Res | 10.1016/j.mrfmmm.2005.10.005 | 2006 | Amino Acid Sequence, Amino Acids/metabolism, Bacterial Proteins/chemistry, Base Sequence, Colony Count, Microbial, Genes, Bacterial/*genetics, Genome, Bacterial/genetics, Genomic Instability/*genetics, Molecular Sequence Data, Mutation/genetics, Mycelium/*growth & development, Nitrogen/*deficiency, Polymorphism, Single-Stranded Conformational, Sequence Alignment, Spores, Bacterial/metabolism, Streptomyces/classification/*genetics/*growth & development/metabolism | Metabolism |
Genetics | 16952952 | Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens. | Choulet F, Gallois A, Aigle B, Mangenot S, Gerbaud C, Truong C, Francou FX, Borges F, Fourrier C, Guerineau M, Decaris B, Barbe V, Pernodet JL, Leblond P | J Bacteriol | 10.1128/JB.00734-06 | 2006 | Base Composition, Chromosomes, Bacterial/*genetics, Conjugation, Genetic, DNA, Bacterial/*genetics, DNA, Complementary, Gene Library, *Genetic Variation, Molecular Sequence Data, Open Reading Frames, Plasmids/genetics, Recombination, Genetic, Sequence Analysis, DNA, Streptomyces/*genetics, *Synteny, Terminal Repeat Sequences/*genetics | Transcriptome |
Genetics | 16956972 | Evolution of the terminal regions of the Streptomyces linear chromosome. | Choulet F, Aigle B, Gallois A, Mangenot S, Gerbaud C, Truong C, Francou FX, Fourrier C, Guerineau M, Decaris B, Barbe V, Pernodet JL, Leblond P | Mol Biol Evol | 10.1093/molbev/msl108 | 2006 | Chromosome Structures, *Chromosomes, Bacterial/chemistry, Conserved Sequence, *Evolution, Molecular, Genetic Drift, Genetic Variation, Genome, Bacterial, Streptomyces/*genetics, Streptomyces coelicolor/genetics, Synteny | |
Metabolism | 17074905 | Multiple biosynthetic and uptake systems mediate siderophore-dependent iron acquisition in Streptomyces coelicolor A3(2) and Streptomyces ambofaciens ATCC 23877. | Barona-Gomez F, Lautru S, Francou FX, Leblond P, Pernodet JL, Challis GL | Microbiology (Reading) | 10.1099/mic.0.29161-0 | 2006 | Deferoxamine/chemistry/metabolism, *Genes, Bacterial, Iron/*metabolism, *Multigene Family, Oligopeptides/genetics/metabolism, Siderophores/*genetics/metabolism, Streptomyces/*genetics/*metabolism, Streptomyces coelicolor/genetics/metabolism | |
Metabolism | 18492804 | Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol. | Komatsu M, Tsuda M, Omura S, Oikawa H, Ikeda H | Proc Natl Acad Sci U S A | 10.1073/pnas.0802312105 | 2008 | Actinobacteria/*enzymology/genetics, Amino Acid Sequence, Camphanes/*metabolism, Conserved Sequence, Cyclization, Diphosphates/metabolism, Diterpenes/metabolism, Escherichia coli/genetics, Genes, Bacterial, Intramolecular Lyases/classification/genetics/*metabolism, Markov Chains, Methylation, Methyltransferases/genetics/*metabolism, Molecular Sequence Data, Phylogeny, Recombinant Proteins/genetics/metabolism, S-Adenosylmethionine/metabolism, Sequence Alignment, Sequence Analysis, Protein, Terpenes/metabolism | Phylogeny |
Metabolism | 20348259 | Biochemical characterization of a novel indole prenyltransferase from Streptomyces sp. SN-593. | Takahashi S, Takagi H, Toyoda A, Uramoto M, Nogawa T, Ueki M, Sakaki Y, Osada H | J Bacteriol | 10.1128/JB.01557-09 | 2010 | Amino Acid Sequence, Bacterial Proteins/chemistry/classification/genetics/*metabolism, Dimethylallyltranstransferase/chemistry/classification/genetics/*metabolism, Hemiterpenes/metabolism, Indoles/*metabolism, Kinetics, Magnetic Resonance Spectroscopy, Mass Spectrometry, Molecular Sequence Data, Molecular Structure, Organophosphorus Compounds/metabolism, Phylogeny, Sequence Homology, Amino Acid, Streptomyces/*enzymology, Substrate Specificity | Phylogeny |
Pathogenicity | 21444795 | Identification of a bioactive 51-membered macrolide complex by activation of a silent polyketide synthase in Streptomyces ambofaciens. | Laureti L, Song L, Huang S, Corre C, Leblond P, Challis GL, Aigle B | Proc Natl Acad Sci U S A | 10.1073/pnas.1019077108 | 2011 | Cell Line, Tumor, Cell Proliferation/drug effects, Gene Silencing, Humans, Macrolides/*chemistry/metabolism/*pharmacology, Multigene Family, Polyketide Synthases/*genetics, Streptomyces/enzymology/*genetics, Transcriptional Activation | Metabolism |
Metabolism | 24258629 | Genome mining of Streptomyces ambofaciens. | Aigle B, Lautru S, Spiteller D, Dickschat JS, Challis GL, Leblond P, Pernodet JL | J Ind Microbiol Biotechnol | 10.1007/s10295-013-1379-y | 2013 | Anti-Bacterial Agents/biosynthesis, Biological Products/chemistry/*metabolism, Biosynthetic Pathways/genetics, *Genome, Bacterial, Secondary Metabolism/genetics, Streptomyces/*genetics/metabolism | Genetics |
Metabolism | 24498152 | A single Sfp-type phosphopantetheinyl transferase plays a major role in the biosynthesis of PKS and NRPS derived metabolites in Streptomyces ambofaciens ATCC23877. | Bunet R, Riclea R, Laureti L, Hotel L, Paris C, Girardet JM, Spiteller D, Dickschat JS, Leblond P, Aigle B | PLoS One | 10.1371/journal.pone.0087607 | 2014 | Antimycin A/analogs & derivatives/biosynthesis, *Bacterial Proteins/genetics/metabolism, *Genes, Bacterial, Netropsin/metabolism, Oligopeptides/biosynthesis/genetics, *Peptide Synthases/genetics/metabolism, *Polyketide Synthases/genetics/metabolism, *Streptomyces/enzymology/genetics, *Transferases (Other Substituted Phosphate Groups)/genetics/metabolism | Enzymology |
Metabolism | 25724953 | Pseudomonas fluorescens pirates both ferrioxamine and ferricoelichelin siderophores from Streptomyces ambofaciens. | Galet J, Deveau A, Hotel L, Frey-Klett P, Leblond P, Aigle B | Appl Environ Microbiol | 10.1128/AEM.03520-14 | 2015 | Culture Media/chemistry, Deferoxamine/*metabolism, Ferric Compounds/*metabolism, *Microbial Interactions, Oligopeptides/*metabolism, Pseudomonas fluorescens/growth & development/*metabolism, Siderophores/*metabolism, Streptomyces/growth & development/*metabolism | Cultivation |
Genetics | 26410452 | Complete genome sequence of Streptomyces ambofaciens ATCC 23877, the spiramycin producer. | Thibessard A, Haas D, Gerbaud C, Aigle B, Lautru S, Pernodet JL, Leblond P | J Biotechnol | 10.1016/j.jbiotec.2015.09.020 | 2015 | Chromosomes, Bacterial/genetics, Evolution, Molecular, Genome, Bacterial/*genetics, Plasmids/genetics, Soil Microbiology, Spiramycin/*metabolism, Streptomyces/*genetics/*metabolism | Metabolism |
Metabolism | 27199346 | Role of secondary metabolites in the interaction between Pseudomonas fluorescens and soil microorganisms under iron-limited conditions. | Deveau A, Gross H, Palin B, Mehnaz S, Schnepf M, Leblond P, Dorrestein PC, Aigle B | FEMS Microbiol Ecol | 10.1093/femsec/fiw107 | 2016 | Iron/*metabolism, Mycorrhizae/metabolism, Oligopeptides, Phenols, Pseudomonas fluorescens/growth & development/*metabolism/physiology, Siderophores/metabolism, Soil, *Soil Microbiology, Streptomyces/metabolism, Thiazoles | |
Metabolism | 27671711 | Degradation of carbonyl sulfide by Actinomycetes and detection of clade D of beta-class carbonic anhydrase. | Ogawa T, Kato H, Higashide M, Nishimiya M, Katayama Y | FEMS Microbiol Lett | 10.1093/femsle/fnw223 | 2016 | ||
27965636 | Multiple and Variable NHEJ-Like Genes Are Involved in Resistance to DNA Damage in Streptomyces ambofaciens. | Hoff G, Bertrand C, Zhang L, Piotrowski E, Chipot L, Bontemps C, Confalonieri F, McGovern S, Lecointe F, Thibessard A, Leblond P | Front Microbiol | 10.3389/fmicb.2016.01901 | 2016 | |||
Metabolism | 29944936 | Pirin: A novel redox-sensitive modulator of primary and secondary metabolism in Streptomyces. | Tala A, Damiano F, Gallo G, Pinatel E, Calcagnile M, Testini M, Fico D, Rizzo D, Sutera A, Renzone G, Scaloni A, De Bellis G, Siculella L, De Benedetto GE, Puglia AM, Peano C, Alifano P | Metab Eng | 10.1016/j.ymben.2018.06.008 | 2018 | *Bacterial Proteins/genetics/metabolism, *Iron-Binding Proteins/genetics/metabolism, *Metabolic Engineering, Oxidation-Reduction, Polyketides/metabolism, *Streptomyces/genetics/metabolism | |
Pathogenicity | 30221219 | Stimulatory Effects of Methyl-beta-cyclodextrin on Spiramycin Production and Physical-Chemical Characterization of Nonhost@Guest Complexes. | Calcagnile M, Bettini S, Damiano F, Tala A, Tredici SM, Pagano R, Di Salvo M, Siculella L, Fico D, De Benedetto GE, Valli L, Alifano P | ACS Omega | 10.1021/acsomega.7b01766 | 2018 | Biotechnology | |
32624939 | An aminoacylase activity from Streptomyces ambofaciens catalyzes the acylation of lysine on alpha-position and peptides on N-terminal position. | Dettori L, Ferrari F, Framboisier X, Paris C, Guiavarc'h Y, Hotel L, Aymes A, Leblond P, Humeau C, Kapel R, Chevalot I, Aigle B, Delaunay S | Eng Life Sci | 10.1002/elsc.201700173 | 2018 | |||
Metabolism | 34586912 | Transcriptional Regulation of Congocidine (Netropsin) Biosynthesis and Resistance. | Vingadassalon A, Lorieux F, Juguet M, Noel A, Santos LDF, Marin Fernandez L, Pernodet JL, Bury-Mone S, Lautru S | Appl Environ Microbiol | 10.1128/AEM.01380-21 | 2021 | Distamycins, *Gene Expression Regulation, Bacterial, Genes, Bacterial, Multigene Family, *Netropsin/biosynthesis, *Streptomyces/genetics/metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9237 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40053) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40053 | |||
18474 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40053.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68382 | Automatically annotated from API zym | |||||
84084 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389373.1 | StrainInfo: A central database for resolving microbial strain identifiers |