Name: Streptomyces ambofaciens Tü 13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14975

Type strain:

Species: Streptomyces ambofaciens

Strain Designation: Tü 13

Culture col. no.: DSM 40697, NRRL 2531, ETH 6703

Strain history: <- H. Zähner, Tü 13 <- ETH, 6703

NCBI tax ID(s): 1889 (species)

SI-ID 49746

DSM 40697, NRRL 2531

Other strains from Streptomyces ambofaciens

S. ambofaciens DSM 40053, ATCC 23877, CBS 616.68, ... (type strain)
S. ambofaciens pSAM2, B2, B-2420, DSM 10282, ATCC ...
S. ambofaciens pSAM2, JI3212 (B3), DSM 10283
S. ambofaciens ST004999(HKI), JA10075, IMET 40226

Section

Streptomyces ambofaciens Tü 13 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces ambofaciens**
	Full Scientific Name (LPSN)	Streptomyces ambofaciens Pinnert-Sindico 1954 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.052

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9702]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9702]

Culture medium growth

[Ref.: #9702]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9702]

Culture medium composition

expand / minimize

[Ref.: #9702]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9702]

Culture medium growth

[Ref.: #9702]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9702]			growth	28 °C

[Ref.: #9702]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9702]	Name of produced compound	congocidin
[Ref.: #9702]	Name of produced compound	spiramycin

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9702]	Sample type/isolated from	soil
[Ref.: #9702]	Geographic location (country and/or sea, region)	Rome
[Ref.: #9702]	Country	Italy
[Ref.: #9702]	Country ISO 3 Code	ITA
[Ref.: #9702]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9702]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces ambofaciens DSM40697 16S-23S ribosomal RNA A intergenic spacer, complete sequence	AY027675	304	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens DSM40697 16S-23S ribosomal RNA B intergenic spacer, complete sequence	AY027676	300	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens DSM40697 16S-23S ribosomal RNA C intergenic spacer, complete sequence	AY027677	300	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens DSM40697 16S-23S ribosomal RNA D intergenic spacer, complete sequence	AY027678	303	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens DSM40697 16S-23S ribosomal RNA E intergenic spacer, complete sequence	AY027679	300	ENA	1889 tax ID	*
[Ref.: #20218]	Streptomyces ambofaciens DSM40697 16S-23S ribosomal RNA F intergenic spacer, complete sequence	AY027680	301	ENA	1889 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces ambofaciens DSM 40697	GCA_001632865	complete	GenBank	1889 tax ID	*
[Ref.: #66792]	Streptomyces ambofaciens strain DSM 40697	1889.10	complete	PATRIC	1889 tax ID	*
[Ref.: #66792]	Streptomyces ambofaciens DSM 40697	2873077840	complete	JGI IMG/M	1889 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces ambofaciens DSM 40697 NCBI: GCA_001632865.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces ambofaciens DSM 40697 NCBI: GCA_001632865.1
[Ref.: #69480]	flagellated	no	98.009	no
[Ref.: #69480]	gram-positive	yes	90.751	no
[Ref.: #69480]	anaerobic	no	99.307	no
[Ref.: #69480]	aerobic	yes	94.825	no
[Ref.: #69480]	halophile	no	92.636	no
[Ref.: #69480]	spore-forming	yes	96.375	no
[Ref.: #69480]	glucose-util	yes	89.796	no
[Ref.: #69480]	motile	no	94.267	no
[Ref.: #69480]	thermophile	no	98.389	yes
[Ref.: #69480]	glucose-ferment	no	86.551	no

Availability in culture collections External links

[Ref.: #9702]

Culture collection no.

DSM 40697, NRRL 2531, ETH 6703

[Ref.: #84085]

SI-ID 49746

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Streptomyces ambofaciens DSM 40697, a Paradigm for Genome Plasticity Studies.	Thibessard A, Leblond P	Genome Announc	10.1128/genomeA.00470-16	2016	*
Genetics	Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens.	Fischer G, Wenner T, Decaris B, Leblond P	Proc Natl Acad Sci U S A	10.1073/pnas.95.24.14296	1998	*
Genetics	Characterization of two Streptomyces ambofaciens recA mutants: identification of the RecA protein by immunoblotting.	Aigle B, Holl AC, Angulo JF, Leblond P, Decaris B	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb10326.x	1997	*
Enzymology	Mapping of the ribosomal operons on the linear chromosomal DNA of Streptomyces ambofaciens DSM40697.	Berger F, Fischer G, Kyriacou A, Decaris B, Leblond P	FEMS Microbiol Lett	10.1111/j.1574-6968.1996.tb08476.x	1996	*
Metabolism	The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA.	Leblond P, Fischer G, Francou FX, Berger F, Guerineau M, Decaris B	Mol Microbiol	10.1046/j.1365-2958.1996.366894.x	1996	*
Genetics	Analysis of genome instability in Streptomyces ambofaciens.	Schneider D, Aigle B, Leblond P, Simonet JM, Decaris B	J Gen Microbiol	10.1099/00221287-139-11-2559	1993	*
Genetics	Primary structure analysis of a duplicated region in the amplifiable AUD6 locus of Streptomyces ambofaciens DSM40697.	Aubert M, Weber E, Schneider D, Simonet JM, Decaris B	FEMS Microbiol Lett	10.1111/j.1574-6968.1993.tb06486.x	1993	*
Enzymology	Genetic instability and associated genome plasticity in Streptomyces ambofaciens: pulsed-field gel electrophoresis evidence for large DNA alterations in a limited genomic region.	Leblond P, Demuyter P, Simonet JM, Decaris B	J Bacteriol	10.1128/jb.173.13.4229-4233.1991	1991	*
Phylogeny	Hypervariability, a new phenomenon of genetic instability, related to DNA amplification in Streptomyces ambofaciens.	Leblond P, Demuyter P, Moutier L, Laakel M, Decaris B, Simonet JM	J Bacteriol	10.1128/jb.171.1.419-423.1989	1989	*
Phylogeny	Characterization of two families of spontaneously amplifiable units of DNA in Streptomyces ambofaciens.	Demuyter P, Leblond P, Decaris B, Simonet JM	J Gen Microbiol	10.1099/00221287-134-7-2001	1988	*
Genetics	Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens.	Choulet F, Gallois A, Aigle B, Mangenot S, Gerbaud C, Truong C, Francou FX, Borges F, Fourrier C, Guerineau M, Decaris B, Barbe V, Pernodet JL, Leblond P	J Bacteriol	10.1128/JB.00734-06	2006	*
Enzymology	Pulsed-field gel electrophoresis analysis of the genome of Streptomyces ambofaciens strains.	Leblond P, Francou FX, Simonet JM, Decaris B	FEMS Microbiol Lett	10.1016/0378-1097(90)90349-u	1990	*
	Genetic instability and hypervariability in Streptomyces ambofaciens: towards an understanding of a mechanism of genome plasticity.	Leblond P, Demuyter P, Simonet JM, Decaris B	Mol Microbiol	10.1111/j.1365-2958.1990.tb00641.x	1990	*

References

#9702

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40697

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84085

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49746.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces ambofaciens DSM 40697

Streptomyces ambofaciens DSM 40697

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