Name: Kitasatospora aburaviensis S-66
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14880

Type strain:

Species: Kitasatospora aburaviensis

Strain Designation: S-66

Culture col. no.: DSM 40033, ATCC 23869, CBS 608.68, IFO 12830, ISP 5033, JCM 4170, KCC S-0170, NBRC 12830, NRRL B-2218, RIA 1107, ISM 1083, BCRC 11617, CBS 280.60, CECT 3315, CGMCC 4.1469, IFM 1083, IMET 43081, IMSNU 21005, JCM 4613, KACC 20033, KCTC 9663, LMG 19305, NRRL ISP-5033, RIA 732, VKM Ac-1868

Strain history: KCC S-0170 <-- IFM 1083 <-- H. Nishimura S-66.

NCBI tax ID(s): 67265 (species)

SI-ID 14101

LMG 19305, ATCC 23869, CCRC 11617, DSM 40033, IFO 12830, IMET 43081, JCM 4170, JCM 4613, NRRL B-2218, VKM Ac-1868, CBS 280.60, AS 4.1469, CECT 3315, IMET 43031, KCTC 9663, NBRC 12830, BCRC 11617, KACC 20033, CGMCC 4.1469

Special Collections

Other strains from Kitasatospora aburaviensis

Section

Kitasatospora aburaviensis S-66 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Kitasatospora*
	Species	**Kitasatospora aburaviensis**
	Full Scientific Name (LPSN)	Kitasatospora aburaviensis (Nishimura et al. 1957) Labeda et al. 2017

Synonym

Streptomyces aburaviensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9232]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9232]

Culture medium growth

[Ref.: #9232]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9232]

Culture medium composition

expand / minimize

[Ref.: #9232]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9232]

Culture medium growth

[Ref.: #9232]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9232]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9232]	growth	28 °C
[Ref.: #18468]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9232]	Name of produced compound	aburamycin
[Ref.: #20216]	Name of produced compound	Aburamycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18468]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18468]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18468]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18468]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18468]	mannitol ChEBI	+
[Ref.: #18468]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18468]	raffinose ChEBI	-
[Ref.: #18468]	rhamnose ChEBI	-
[Ref.: #18468]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18468]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	aburamycin A	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18468]	53	+	+	+	+	-	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9232]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Aburabi, Shiga Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184178 (>99% sequence identity) for Streptomycetaceae from Microbeatlas

Aquatic Samples	54
Soil Samples	1733
Animal Samples	127
Plant Samples	125
Total Samples	2039

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18468]	Biosafety level	1	German classification
[Ref.: #9232]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9232]	Streptomyces aburaviensis 16S ribosomal RNA gene, partial sequence	AY999886	1442	GenBank ENA	67265 tax ID
[Ref.: #20218]	Streptomyces aburaviensis gene for 16S rRNA, partial sequence	AB122746	564	GenBank ENA	67265 tax ID	*
[Ref.: #20218]	Streptomyces aburaviensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4613	D44265	120	GenBank ENA	67265 tax ID	*
[Ref.: #20218]	Streptomyces aburaviensis gene for 16S rRNA, partial sequence, strain: NBRC 12830	AB184178	1457	GenBank ENA	67265 tax ID	*
[Ref.: #20218]	Streptomyces aburaviensis strain NRRL B-2218 16S ribosomal RNA gene, partial sequence	AY999779	1492	GenBank ENA	67265 tax ID	*

Availability in culture collections External links

[Ref.: #9232]

Culture collection no.

DSM 40033, ATCC 23869, CBS 608.68, IFO 12830, ISP 5033, JCM 4170, KCC S-0170, NBRC 12830, NRRL B-2218, RIA 1107, ISM 1083, BCRC 11617, CBS 280.60, CECT 3315, CGMCC 4.1469, IFM 1083, IMET 43081, IMSNU 21005, JCM 4613, KACC 20033, KCTC 9663, LMG 19305, NRRL ISP-5033, RIA 732, VKM Ac-1868

[Ref.: #83989]

SI-ID 14101

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively.	Take A, Matsumoto A, Omura S, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2014.162	2014	*

References

#9232

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40033

#18468

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83989

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14101.1 )

* These data were automatically processed and therefore are not curated

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