Strain identifier

BacDive ID: 14880

Type strain: Yes

Species: Kitasatospora aburaviensis

Strain Designation: S-66

Strain history: KCC S-0170 <-- IFM 1083 <-- H. Nishimura S-66.

NCBI tax ID(s): 67265 (species)

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General

@ref: 9232

BacDive-ID: 14880

DSM-Number: 40033

keywords: 16S sequence, Bacteria, antibiotic compound production

description: Kitasatospora aburaviensis S-66 is a bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 67265
  • Matching level: species

strain history

@refhistory
9232<- E.B. Shirling, ISP <- H. Nishimura, SRL S-66
67770KCC S-0170 <-- IFM 1083 <-- H. Nishimura S-66.

doi: 10.13145/bacdive14880.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Kitasatospora
  • species: Kitasatospora aburaviensis
  • full scientific name: Kitasatospora aburaviensis (Nishimura et al. 1957) Labeda et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces aburaviensis

@ref: 9232

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Kitasatospora

species: Kitasatospora aburaviensis

full scientific name: Kitasatospora aburaviensis (Nishimura et al. 1957) Labeda et al. 2017

strain designation: S-66

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9232GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9232ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperature
18468positiveoptimum28
9232positivegrowth28
67770positivegrowth28

Physiology and metabolism

compound production

@refcompound
9232aburamycin
20216Aburamycin

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1846817234glucose+
1846822599arabinose+
1846817992sucrose-
1846818222xylose-
1846817268myo-inositol-
1846829864mannitol+
1846828757fructose+/-
1846826546rhamnose-
1846816634raffinose-
1846862968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770aburamycin Ayes
68368acetoinyes15688
68368indoleno35581
68368hydrogen sulfideno16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18468++++--+--++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9232soil
67770SoilAburabi, Shiga Pref.JapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_208.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_148;97_159;98_177;99_208&stattab=map
  • Last taxonomy: Streptomycetaceae
  • 16S sequence: AB184178
  • Sequence Identity:
  • Total samples: 2039
  • soil counts: 1733
  • aquatic counts: 54
  • animal counts: 127
  • plant counts: 125

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
184681German classification
92321Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces aburaviensis gene for 16S rRNA, partial sequenceAB122746564nuccore67265
20218Streptomyces aburaviensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4613D44265120nuccore67265
20218Streptomyces aburaviensis gene for 16S rRNA, partial sequence, strain: NBRC 12830AB1841781457nuccore67265
20218Streptomyces aburaviensis strain NRRL B-2218 16S ribosomal RNA gene, partial sequenceAY9997791492nuccore67265
9232Streptomyces aburaviensis 16S ribosomal RNA gene, partial sequenceAY9998861442nuccore67265

External links

@ref: 9232

culture collection no.: DSM 40033, ATCC 23869, CBS 608.68, IFO 12830, ISP 5033, JCM 4170, KCC S-0170, NBRC 12830, NRRL B-2218, RIA 1107, ISM 1083, BCRC 11617, CBS 280.60, CECT 3315, CGMCC 4.1469, IFM 1083, IMET 43081, IMSNU 21005, JCM 4613, KACC 20033, KCTC 9663, LMG 19305, NRRL ISP-5033, RIA 732, VKM Ac-1868

straininfo link

  • @ref: 83989
  • straininfo: 14101

literature

  • topic: Phylogeny
  • Pubmed-ID: 25491896
  • title: Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively.
  • authors: Take A, Matsumoto A, Omura S, Takahashi Y
  • journal: J Antibiot (Tokyo)
  • DOI: 10.1038/ja.2014.162
  • year: 2014
  • mesh: Acetylcysteine/*analogs & derivatives/metabolism, Anti-Bacterial Agents/*metabolism, DNA, Bacterial/genetics, Diterpenes/*metabolism, Gene Expression Regulation, Bacterial/physiology, Phylogeny, Species Specificity, Streptomyces/*classification/*metabolism/ultrastructure
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9232Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40033)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40033
18468Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40033.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83989Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14101.1StrainInfo: A central database for resolving microbial strain identifiers