Cite this strain

Actinomyces sp. (CCUG 33920)

Name: Actinomyces sp. (CCUG 33920)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 147629

Type strain

Culture col. no. CCUG 33920

NCBI tax ID(s) 29317

Special Collections CCUG

Links

CCUG 33920 is a prokaryote that was isolated from Human plaque,healthy man.

genome sequence

Name and taxonomic classification

SI-ID 51282

CCUG 33920

@ref 20215

Last LPSN update 2025-12-16 10:05:23

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Actinomyces

Full scientific name Actinomyces Harz 1877 (Approved Lists 1980)

Synonyms (2)

"Odontomyces"
"Actinobacterium"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	95
125438		92.875
125438	positive	91.017

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body-Site	#Oral cavity and airways	#Plaque

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
51825	Human plaque,healthy man	1990	Göteborg	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM193767v1 assembly for Actinomyces oris CCUG 33920	scaffold	GCA_001937675	544580.31	544580	68.48

Genome browser: GCA_001937675

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinomyces oris CCUG 33920
NCBI: GCA_001937675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	74.40	no
125439	motility	BacteriaNetⓘ	no	77.00	no
125439	gram_stain	BacteriaNetⓘ	positive	95.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	87.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomyces oris CCUG 33920
NCBI: GCA_001937675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.02	no
125438	anaerobic	anaerobicⓘ	no	75.58	no
125438	aerobic	aerobicⓘ	no	81.30	no
125438	spore-forming	spore-formingⓘ	no	79.65	no
125438	thermophilic	thermophileⓘ	no	94.14	no
125438	flagellated	motile2+ⓘ	no	92.88	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#51825	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33920
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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