Strain identifier
version 8.1 (current version)
General
@ref: 51825
BacDive-ID: 147629
keywords: genome sequence, Bacteria
description: Actinomyces sp. CCUG 33920 is a bacterium that was isolated from Human plaque,healthy man.
NCBI tax id
- NCBI tax id: 29317
- Matching level: species
doi: 10.13145/bacdive147629.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Actinomyces
- species: Actinomyces sp.
- full scientific name: Actinomyces Harz 1877 (Approved Lists 1980)
synonyms
@ref synonym 20215 Odontomyces 20215 Actinobacterium
@ref: 51825
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Actinomyces
species: Actinomyces sp.
type strain: no
Isolation, sampling and environmental information
isolation
- @ref: 51825
- sample type: Human plaque,healthy man
- sampling date: 1990
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Oral cavity and Airways | #Dental plaque |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Actinomyces oris CCUG 33920 | GCA_001937675 | scaffold | ncbi | 544580 |
66792 | Actinomyces oris strain CCUG 33920 | 544580.31 | wgs | patric | 544580 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 95.981 | no |
gram-positive | yes | 95.446 | no |
anaerobic | no | 80.927 | no |
halophile | no | 88.169 | no |
spore-forming | no | 92.968 | no |
glucose-util | yes | 87.557 | no |
aerobic | no | 90.109 | no |
thermophile | no | 95.044 | no |
motile | no | 88.45 | no |
glucose-ferment | yes | 79.755 | no |
External links
@ref: 51825
culture collection no.: CCUG 33920
straininfo link
- @ref: 102315
- straininfo: 51282
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
51825 | Curators of the CCUG | https://www.ccug.se/strain?id=33920 | Culture Collection University of Gothenburg (CCUG) (CCUG 33920) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
102315 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID51282.1 |