Name: Actinobaculum massiliense DSM 19118
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 147

Type strain:

Species: Actinobaculum massiliense

Culture col. no.: DSM 19118, CCUG 47753, CIP 107404

Strain history: <- CCUG <- CIP <- C. Bibard

NCBI tax ID(s): 202789 (species)

Other strains from Actinobaculum massiliense

A. massiliense FC1, FC3, DSM 100580, CSUR P1982 (type strain)
A. massiliense CCUG 36823 A
A. massiliense CCUG 57921
A. massiliense CCUG 57922
A. massiliense CCUG 59258 B
A. massiliense CCUG 59462
A. massiliense CCUG 63759 A
A. massiliense CCUG 64074
A. massiliense CCUG 68253

Section

Actinobaculum massiliense DSM 19118 is an anaerobe, mesophilic bacterium that was isolated from human urine, 81-yr-old woman with cystitis.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Actinobaculum*
	Species	"Actinobaculum massiliense"
	Full Scientific Name (PNU)	Actinobaculum massiliense corrig. Greub and Raoult 2002

Synonym

"Actinobaculum massiliae"

Information on morphological and physiological properties Morphology

[Ref.: #57854]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7917]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7917]

Culture medium growth

[Ref.: #7917]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7917]

Culture medium composition

expand / minimize

[Ref.: #7917]

Culture medium

CHOCOLATE AGAR (DSMZ Medium 429b)

[Ref.: #7917]

Culture medium growth

[Ref.: #7917]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7917]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7917]			growth	37 °C
[Ref.: #57854]			growth	37 °C

[Ref.: #7917]	Temperature range	mesophilic
[Ref.: #57854]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7917]	Oxygen tolerance	anaerobe
[Ref.: #57854]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite
[Ref.: #68380]		indole ChEBI	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7917]	11379	-	-	-	-	-	+	+	+	-	-	-	+/-	-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7917]	Sample type/isolated from	human urine, 81-yr-old woman with cystitis
[Ref.: #7917]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #7917]	Country	France
[Ref.: #7917]	Country ISO 3 Code	FRA
[Ref.: #7917]	Continent	Europe

[Ref.: #57854]	Sample type/isolated from	Human urine,81-yr-old woman,cystitis
[Ref.: #57854]	Sampling date	2001
[Ref.: #57854]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #57854]	Country	France
[Ref.: #57854]	Country ISO 3 Code	FRA
[Ref.: #57854]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Human	#Female
#Host Body Product	#Fluids	#Urine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF487679 (>99% sequence identity) for Actinobaculum massiliense subclade from Microbeatlas

Aquatic Samples	21
Soil Samples	31
Animal Samples	1924
Plant Samples	1
Total Samples	1977

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7917]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinobaculum massiliense strain CIP 107404 16S ribosomal RNA gene, partial sequence	AF487679	1504	ENA	202789 tax ID	*

Availability in culture collections External links

[Ref.: #7917]

Culture collection no.

DSM 19118, CCUG 47753, CIP 107404

[Ref.: #20218]

Associated Passport(s) in StrainInfo

701830, 332174

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T ( = DSM 19118T), revealing that it does not represent a strain of this species.	Yassin AF, Sproer C, Pukall R, Sylvester M, Siering C, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.069294-0	2014	*
Phylogeny	The status of the species Actinobaculum massiliense (Greub and Raoult 2006). Request for an Opinion.	Yassin AF, Sproer C, Pukall R, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.000011	2014	*

References

#7917

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19118

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#57854 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47753

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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