Bacillus licheniformis (CCUG 31354)

Name: Bacillus licheniformis (CCUG 31354)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 146513

Type strain

Culture col. no. CCUG 31354

NCBI tax ID(s) 1402

Special Collections CCUG

Links

Bacillus licheniformis CCUG 31354 is a bacterium that was isolated from Water,well.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 51827

CCUG 31354

@ref 20215

Last LPSN update 2026-02-09 11:35:24

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus licheniformis

Full scientific name Bacillus licheniformis (Weigmann 1898) Chester 1901 (Approved Lists 1980)

Synonyms (1)

"Clostridium licheniforme"

BacDive ID	Other strains from **Bacillus licheniformis** (119)	Type strain
689	B. licheniformis Gibson 46, 46, 1264, DSM 13, ATCC 14580, ... (type strain)
684	B. licheniformis III, CCUG 26007, LMG 7561, DSM 392
685	B. licheniformis IV, DSM 394
686	B. licheniformis Tracy I, DSM 603, ATCC 10716, CCM 2181, IFO ...
687	B. licheniformis DSM 1913, ATCC 21733
688	B. licheniformis DSM 1969, ATCC 21424
690	B. licheniformis C, DSM 15
691	B. licheniformis DSM 7259, NRRL NRS-1263
692	B. licheniformis 2, DSM 7459
693	B. licheniformis 749/c, DSM 8782, ATCC 25972, DSM 46217, IMET ...
694	B. licheniformis AMNH 723, BU 171, CCDB b-30, Ford 1, Hankey ...
695	B. licheniformis SUD K2, DSM 11258
696	B. licheniformis SUD K3, DSM 11259
697	B. licheniformis 1.1B, 1.1.B, DSM 12369, CIP 108208
698	B. licheniformis 51.1, DSM 12370, CIP 108209
699	B. licheniformis ES2-W12c1, DSM 30654
700	B. licheniformis ES1-140-3, DSM 30523
701	B. licheniformis ES1-182-4, DSM 30535
702	B. licheniformis ES2-W1c2, DSM 30615
703	B. licheniformis ES1-188-4, DSM 30542
704	B. licheniformis ES1-417-1, DSM 30585
705	B. licheniformis ES2-W2c2, DSM 30620
706	B. licheniformis ES2-W3c1, DSM 30624
707	B. licheniformis ES2-W7c2, DSM 30643
708	B. licheniformis FR1-89con, DSM 30724
709	B. licheniformis ES-MS4, DSM 30766
710	B. licheniformis ES-MS18, DSM 30769
711	B. licheniformis W6/2, DSM 30778
712	B. licheniformis W7/3, DSM 30779
713	B. licheniformis E11, DSM 30865
130860	B. licheniformis P-11, DSM 100655
130859	B. licheniformis P-9, DSM 100653
130858	B. licheniformis D2411, DSM 28591
22912	B. licheniformis P8/2_1, DSM 30926
23615	B. licheniformis T5a, DSM 30959
23616	B. licheniformis T5c, DSM 30961
130163	B. licheniformis 3G1B1, DSM 26543
130164	B. licheniformis SHG10, DSM 28096
130165	B. licheniformis T5b, DSM 30960
130166	B. licheniformis G9, DSM 31019
130167	B. licheniformis T2_2, DSM 30976
131627	B. licheniformis Stev55, DSM 103059
134785	B. licheniformis CIP A156, NCTC 6816
134876	B. licheniformis 664.81, As-16-3, CIP 81.50
134877	B. licheniformis 665.81, BS3, CIP 81.51
134893	B. licheniformis 719.86, CIP 102707
134938	B. licheniformis 10.87, CIP 102759
135271	B. licheniformis CIP 58.29
135464	B. licheniformis 6.87, CIP 102755
135707	B. licheniformis 666.81, CIP 81.52, UC 8
135960	B. licheniformis 2151, CIP 51.26
136046	B. licheniformis 379-86, CIP 102384
136103	B. licheniformis 506.86, CIP 102497
136170	B. licheniformis CIP A42
136411	B. licheniformis BS 3, CIP 105462
136987	B. licheniformis KG9, CIP 109282
137211	B. licheniformis 380-86, CIP 102385
137758	B. licheniformis 662.85, CIP 101825
137932	B. licheniformis 201-86, CIP 102229
137933	B. licheniformis 202-86, CIP 102230
138681	B. licheniformis 897.85, CIP 101950
138743	B. licheniformis 681.86, CIP 102681
139208	B. licheniformis 1265, 601, CIP 52.72
139405	B. licheniformis CIP 53.172, ATCC 8187, NCTC 2120, NRRL NRS-778, ...
143606	B. licheniformis CCUG 20568
143631	B. licheniformis CCUG 20661
144640	B. licheniformis CCUG 26008, LMG 7626
145068	B. licheniformis CCUG 27592
145354	B. licheniformis CCUG 28267 A
145378	B. licheniformis CCUG 28324
145530	B. licheniformis CCUG 28771
146881	B. licheniformis CCUG 32353
147252	B. licheniformis CCUG 33204
147366	B. licheniformis CCUG 33464
147902	B. licheniformis CCUG 34458
148398	B. licheniformis CCUG 35363
149019	B. licheniformis CCUG 36735
149287	B. licheniformis CCUG 37423
149599	B. licheniformis CCUG 38039
150186	B. licheniformis CCUG 39222
150481	B. licheniformis CCUG 41410
150482	B. licheniformis CCUG 41412
150515	B. licheniformis CCUG 41470
150516	B. licheniformis CCUG 41471
150623	B. licheniformis CCUG 41786
150656	B. licheniformis CCUG 41881
150768	B. licheniformis CCUG 42256
150874	B. licheniformis CCUG 42605
151172	B. licheniformis CCUG 43404
151173	B. licheniformis CCUG 43405
151174	B. licheniformis CCUG 43406
151175	B. licheniformis CCUG 43407
151177	B. licheniformis CCUG 43409
151178	B. licheniformis CCUG 43410
151179	B. licheniformis CCUG 43411
151180	B. licheniformis CCUG 43412
151218	B. licheniformis CCUG 43486
151229	B. licheniformis CCUG 43512 A
151645	B. licheniformis CCUG 44512
151702	B. licheniformis CCUG 44671
151741	B. licheniformis CCUG 44767
151801	B. licheniformis CCUG 44939
153016	B. licheniformis CCUG 48322
153178	B. licheniformis CCUG 48650
157593	B. licheniformis 2C-C25, DSM 105525
158838	B. licheniformis K26-3, DSM 109521
158839	B. licheniformis CA-T2, DSM 110955
162879	B. licheniformis JCM 20329, IAM 11054
169165	B. licheniformis B1, DSM 103640
169166	B. licheniformis CLA-AP-5, DSM 111625
169167	B. licheniformis Turin101221_C9a2, DSM 113557
169168	B. licheniformis Turin3-S41, DSM 113927
169169	B. licheniformis Turin4- S28, DSM 113928
169170	B. licheniformis Turin15-W31, DSM 113931
173146	B. licheniformis CIMB24, CIMB 04-8363, CRBIP17.24
173147	B. licheniformis CIMB 04-5439, CRBIP17.26
174352	B. licheniformis MM1_1, DSM 110489
174353	B. licheniformis PD1_1, DSM 110495
174354	B. licheniformis HUN382, VTM3R78, DSM 116458

Morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		94.763

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
50545	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
50545	-	+	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	+	-	-	-	+	+	-	+	+	-	+	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
50545	Water,well	1993-03-31	Borås	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM783123v1 assembly for Bacillus licheniformis CCUG 31354	scaffold	GCA_007831235	1402.323	1402	60.34

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus licheniformis CCUG 31354
NCBI: GCA_007831235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	53.00	no
125439	motility	BacteriaNetⓘ	yes	55.10	no
125439	gram_stain	BacteriaNetⓘ	variable	87.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	75.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus licheniformis CCUG 31354
NCBI: GCA_007831235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.23	no
125438	anaerobic	anaerobicⓘ	no	91.14	no
125438	aerobic	aerobicⓘ	no	52.74	no
125438	spore-forming	spore-formingⓘ	yes	94.76	no
125438	thermophilic	thermophileⓘ	no	95.09	no
125438	flagellated	motile2+ⓘ	yes	88.60	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#50545	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31354
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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