Sphingomonas parapaucimobilis (CCUG 27292, JCM 7512, GIFU 2135)

Name: Sphingomonas parapaucimobilis (CCUG 27292, JCM 7512, GIFU 2135)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 144957

Type strain

Culture col. no. CCUG 27292 JCM 7512 GIFU 2135 IFO 15101 KCTC 2816 1 more

NCBI tax ID(s) 28213

Special Collections CCUG JCM KCTC

Links

Sphingomonas parapaucimobilis CCUG 27292 is a mesophilic prokaryote that was isolated from Vaginal swab.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 57074

CCUG 27292,JCM 7512,IFO 15101,KCTC 2816,NBRC 15101

@ref 20215

Last LPSN update 2025-12-16 10:04:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas parapaucimobilis

Full scientific name Sphingomonas parapaucimobilis Yabuuchi et al. 1990

BacDive ID	Other strains from **Sphingomonas parapaucimobilis** (3)	Type strain
14220	S. parapaucimobilis OH 3807, DSM 7463, ATCC 51231, GIFU 11387, ... (type strain)
165544	S. parapaucimobilis JCM 7517, GIFU 2266
165547	S. parapaucimobilis JCM 7520, GIFU 11693

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	+		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

48701

Fatty acid	Percentage	ECL
C17:1 ω6c	37	16.862
C18:1 ω7c /12t/9t	31	17.824
C15:0	5.8	15
C16:0	5.4	16
C17:1 ω8c	4.6	16.792
C16:1 ω7c	4.5	15.819
C17:0	4.4	17
C15:0 2OH	4.2	16.217
C18:1 ω5c	2.1	17.919
C15:1 ω6c	0.9	14.856

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
48701	-	+	-	+	-	+	+	-	-	-	+	+	-	+	-	+	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
48701	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Urogenital tract	#Vagina
#Infection	#Patient	#Swab

Isolation

@ref	Sample type
48701	Vaginal swab
67770	Vaginal swab

Taxonmaps

69479

Global distribution of 16S sequence LC504027 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	518
Soil Samples	167
Animal Samples	1394
Plant Samples	394
Total Samples	2473

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Sphingomonas parapaucimobilis JCM 7512 gene for 16S ribosomal RNA, partial sequence	LC504027	1411	28213
124043	Sphingomonas parapaucimobilis gene for 16S rRNA, partial sequence, strain: NBRC 15101.	AB680768	1414	28213
124043	Sphingomonas parapaucimobilis 16S ribosomal RNA, partial sequence.	D38425	156	28213

GC content

@ref	GC-content (mol%)	Method
67770	64.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Systematically investigating and identifying bacteriocins in the human gut microbiome.	Zhang D, Zou Y, Shi Y, Zhang J, Liu J, Wu G, Zhang J, Gao Y, Chen M, Li YX.	Cell Genom	10.1016/j.xgen.2025.100983	2025

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#48701	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27292
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas parapaucimobilis (CCUG 27292, JCM 7512, GIFU 2135)

Name and taxonomic classification

Morphology