Name: Jeotgalicoccus psychrophilus YKJ-115
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14412

Type strain:

Species: Jeotgalicoccus psychrophilus

Strain Designation: YKJ-115

Culture col. no.: DSM 19085, JCM 11199, KCCM 41449, CCUG 47729, CCM 7136, CGMCC 1.6772, CIP 107952

Strain history: CIP <- 2003, JCM <- Y.H. Park: strain YKJ-115

NCBI tax ID(s): 1122129 (strain), 157228 (species)

SI-ID 100702

JCM 11199, CCUG 47729, CIP 107952, CCM 7136, DSM 19085

Special Collections

Section

Jeotgalicoccus psychrophilus YKJ-115 is a facultative anaerobe, Gram-positive bacterium that was isolated from jeotgal, Korean fermented seafood.

Gram-positive
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Jeotgalicoccus*
	Species	**Jeotgalicoccus psychrophilus**
	Full Scientific Name (LPSN)	Jeotgalicoccus psychrophilus Yoon et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #122031]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.751

[Ref.: #122031]	Cell shape	coccus-shaped

[Ref.: #122031]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7877]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7877]

Culture medium growth

[Ref.: #7877]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7877]

Culture medium composition

expand / minimize

[Ref.: #39965]

Culture medium

Marine agar (MA)

[Ref.: #39965]

Culture medium growth

[Ref.: #39965]

Culture medium composition

expand / minimize

[Ref.: #122031]

Culture medium

CIP Medium 13

[Ref.: #122031]

Culture medium growth

[Ref.: #122031]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7877]		growth	28 °C
[Ref.: #39965]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #122031]		growth	10-37 °C
[Ref.: #122031]	no	growth	41 °C
[Ref.: #122031]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122031]

Oxygen tolerance

facultative anaerobe

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122031]	hippurate ChEBI	-	hydrolysis
[Ref.: #122031]	nitrate ChEBI	-	reduction
[Ref.: #122031]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122031]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122031]		acetoin ChEBI	-
[Ref.: #122031]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122031]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122031]	amylase	-
[Ref.: #122031]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122031]	caseinase	-	3.4.21.50
[Ref.: #122031]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122031]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122031]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122031]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122031]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122031]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122031]	oxidase	+
[Ref.: #122031]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122031]	tween esterase	-
[Ref.: #122031]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122031]	10770	-	+	+	+	-	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7877]	Sample type/isolated from	jeotgal, Korean fermented seafood
[Ref.: #7877]	Country	Republic of Korea
[Ref.: #7877]	Country ISO 3 Code	KOR
[Ref.: #7877]	Continent	Asia

[Ref.: #57844]	Sample type/isolated from	Jeotgal (traditional Korean fermented seafood)

[Ref.: #67770]	Sample type/isolated from	Jeotgal, traditional Korean fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #122031]	Sample type/isolated from	Food, Fermented seafood jeotgal
[Ref.: #122031]	Country	Republic of Korea
[Ref.: #122031]	Country ISO 3 Code	KOR
[Ref.: #122031]	Continent	Asia
[Ref.: #122031]	Isolation date	1999
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY028926 (>99% sequence identity) for Jeotgalicoccus psychrophilus from Microbeatlas

Aquatic Samples	353
Soil Samples	504
Animal Samples	3842
Plant Samples	134
Total Samples	4833

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7877]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122031]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7877]	Jeotgalicoccus psychrophilus 16S ribosomal RNA gene, partial sequence	AY028926	1507	GenBank ENA	157228 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Jeotgalicoccus psychrophilus DSM 19085	GCA_000425845	scaffold	GenBank ENA	1122129 tax ID
[Ref.: #66792]	Jeotgalicoccus psychrophilus DSM 19085	1122129.3	wgs	PATRIC	1122129 tax ID	*
[Ref.: #66792]	Jeotgalicoccus psychrophilus DSM 19085	2524614585	draft	JGI IMG/M	1122129 tax ID	*

[Ref.: #7877]	GC-content	42 mol%
[Ref.: #67770]	GC-content	42 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jeotgalicoccus psychrophilus DSM 19085 DSM 19085 NCBI: GCA_000425845.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	79	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jeotgalicoccus psychrophilus DSM 19085 PATRIC: 1122129.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.751	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.602	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	78.083	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	72.556	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.419	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	80.756	no

Availability in culture collections External links

[Ref.: #7877]

Culture collection no.

DSM 19085, JCM 11199, KCCM 41449, CCUG 47729, CCM 7136, CGMCC 1.6772, CIP 107952

[Ref.: #83556]

SI-ID 100702

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalicoccus halophilus sp. nov., isolated from salt lakes.	Liu WY, Jiang LL, Guo CJ, Yang SS	Int J Syst Evol Microbiol	10.1099/ijs.0.022251-0	2010	*
Phylogeny	Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal.	Yoon JH, Lee KC, Weiss N, Kang KH, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02132-0	2003	*

References

#7877

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19085

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39965 ; Curators of the CIP;
#57844 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47729

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83556

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100702.1 )

#122031 Collection of Institut Pasteur ; Curators of the CIP; CIP 107952
* These data were automatically processed and therefore are not curated

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Jeotgalicoccus psychrophilus DSM 19085 DSM 19085

Jeotgalicoccus psychrophilus DSM 19085

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