Name: Jeotgalicoccus halotolerans YKJ-101
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14411

Type strain:

Species: Jeotgalicoccus halotolerans

Strain Designation: YKJ-101, YRJ-101

Culture col. no.: DSM 17274, CCM 7135, CCUG 47728, CIP 107958, JCM 11198, KCCM 41448, CGMCC 1.6779

Strain history: CIP <- 2003, JCM <- Y.H. Park: strain YRJ-101

NCBI tax ID(s): 157227 (species)

SI-ID 100701

JCM 11198, CCUG 47728, CIP 107958, CCM 7135, DSM 17274

Special Collections

Section

Jeotgalicoccus halotolerans YKJ-101 is an obligate aerobe, Gram-positive, coccus-shaped bacterium that was isolated from jeotgal, traditional Korean fermented seafood.

coccus-shaped
Gram-positive
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Jeotgalicoccus*
	Species	**Jeotgalicoccus halotolerans**
	Full Scientific Name (LPSN)	Jeotgalicoccus halotolerans Yoon et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #119826]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.207

[Ref.: #119826]	Cell shape	coccus-shaped

[Ref.: #119826]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6866]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6866]

Culture medium growth

[Ref.: #6866]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6866]

Culture medium composition

expand / minimize

[Ref.: #33184]

Culture medium

Marine agar (MA)

[Ref.: #33184]

Culture medium growth

[Ref.: #33184]

Culture medium composition

expand / minimize

[Ref.: #119826]

Culture medium

CIP Medium 13

[Ref.: #119826]

Culture medium growth

[Ref.: #119826]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6866]		growth	28 °C
[Ref.: #33184]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #119826]		growth	10-41 °C
[Ref.: #119826]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119826]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119826]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119826]	hippurate ChEBI	-	hydrolysis
[Ref.: #119826]	nitrate ChEBI	-	reduction
[Ref.: #119826]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119826]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119826]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #119826]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119826]	amylase	-
[Ref.: #119826]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119826]	caseinase	-	3.4.21.50
[Ref.: #119826]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119826]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #119826]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119826]	gelatinase	-
[Ref.: #119826]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119826]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119826]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119826]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119826]	oxidase	+
[Ref.: #119826]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #119826]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119826]	tween esterase	-
[Ref.: #119826]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119826]	10776	-	-	+	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6866]	Sample type/isolated from	jeotgal, traditional Korean fermented seafood
[Ref.: #6866]	Country	Republic of Korea
[Ref.: #6866]	Country ISO 3 Code	KOR
[Ref.: #6866]	Continent	Asia

[Ref.: #57843]	Sample type/isolated from	Jeotgal (traditional Korean fermented seafood)

[Ref.: #67770]	Sample type/isolated from	Jeotgal, traditional Korean fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #119826]	Sample type/isolated from	Jeotgal
[Ref.: #119826]	Geographic location (country and/or sea, region)	Taejon
[Ref.: #119826]	Country	Republic of Korea
[Ref.: #119826]	Country ISO 3 Code	KOR
[Ref.: #119826]	Continent	Asia
[Ref.: #119826]	Isolation date	1999
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6866]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119826]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6866]	Jeotgalibacillus halotolerans 16S ribosomal RNA gene, partial sequence	AY028925	1506	GenBank ENA	157227 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Jeotgalicoccus halotolerans DSM 17274	GCA_003387165	scaffold	GenBank ENA	157227 tax ID
[Ref.: #66792]	Jeotgalicoccus halotolerans strain DSM 17274	157227.3	wgs	PATRIC	157227 tax ID	*
[Ref.: #66792]	Jeotgalicoccus halotolerans DSM 17274	2770939612	draft	JGI IMG/M	157227 tax ID	*

[Ref.: #6866]	GC-content	42 mol%
[Ref.: #67770]	GC-content	42 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jeotgalicoccus halotolerans DSM 17274 NCBI: GCA_003387165.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	61	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jeotgalicoccus halotolerans strain DSM 17274 PATRIC: 157227.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.207	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.503	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	79.272	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.618	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.419	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	81.935	no

Availability in culture collections External links

[Ref.: #6866]

Culture collection no.

DSM 17274, CCM 7135, CCUG 47728, CIP 107958, JCM 11198, KCCM 41448, CGMCC 1.6779

[Ref.: #83555]

SI-ID 100701

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalicoccus halophilus sp. nov., isolated from salt lakes.	Liu WY, Jiang LL, Guo CJ, Yang SS	Int J Syst Evol Microbiol	10.1099/ijs.0.022251-0	2010	*
Phylogeny	Jeotgalicoccus coquinae sp. nov. and Jeotgalicoccus aerolatus sp. nov., isolated from poultry houses.	Martin E, Klug K, Frischmann A, Busse HJ, Kampfer P, Jackel U	Int J Syst Evol Microbiol	10.1099/ijs.0.021675-0	2010	*
Phylogeny	Jeotgalicoccus huakuii sp. nov., a halotolerant bacterium isolated from seaside soil.	Guo XQ, Li R, Zheng LQ, Lin DQ, Sun JQ, Li SP, Li WJ, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijs.0.013623-0	2009	*
Phylogeny	Salinicoccus jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.	Aslam Z, Lim JH, Im WT, Yasir M, Chung YR, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64586-0	2007	*
Phylogeny	Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal.	Yoon JH, Lee KC, Weiss N, Kang KH, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02132-0	2003	*

References

#6866

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17274

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33184 ; Curators of the CIP;
#57843 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47728

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83555

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100701.1 )

#119826 Collection of Institut Pasteur ; Curators of the CIP; CIP 107958
* These data were automatically processed and therefore are not curated

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Jeotgalicoccus halotolerans DSM 17274

Jeotgalicoccus halotolerans strain DSM 17274

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