Jeotgalicoccus marinus (DSM 19772, CCTCC AA 207028, KCTC 13189)

Name: Jeotgalicoccus marinus (DSM 19772, CCTCC AA 207028, KCTC 13189)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14413

Type strain

Culture col. no. DSM 19772 CCTCC AA 207028 KCTC 13189 JSM 076033

NCBI tax ID(s) 1122128 516700

Special Collections DSMZ KCTC Literature strains

History DSMZ <- Y.-G. Chen and S.-K. Tang, YIM; JSM 076033 KCTC <- YG Chen, Yunnan Inst., China

Links

Jeotgalicoccus marinus DSM 19772 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from sea urchin Hemicentrotus pulcherrimus.

Gram-positive coccus-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408200

KCTC 13189,DSM 19772

@ref 20215

Last LPSN update 2026-05-29 08:28:17

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Jeotgalicoccus

Species Jeotgalicoccus marinus

Full scientific name Jeotgalicoccus marinus Chen et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Confidence
28951	positive	0.9 µm	coccus-shaped
67771			coccus-shaped
67771	positive
125438	positive			90.538

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8308	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8308	positive	growth	28
28951	positive	growth	10-45
28951	positive	optimum	27.5
67771	positive	growth	25-30

Culture pH

@ref	Ability	Type	PH	PH range
28951	positive	optimum	7.5
28951	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
28951	facultative anaerobe
67771	aerobe
125439	obligate aerobe	96.752

Spore formation

@ref	Spore formation
28951
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
28951	NaCl	positive	growth	0.5-25.0 %
28951	NaCl	positive	optimum	7.5 %

Observation

@ref	Observation
28951	aggregates in clumps
67771	quinones: MK-7, MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28951	16449 ChEBI	alanine	+	carbon source
28951	22599 ChEBI	arabinose	+	carbon source
28951	29016 ChEBI	arginine	+	carbon source
28951	22653 ChEBI	asparagine	+	carbon source
28951	17057 ChEBI	cellobiose	+	carbon source
28951	16947 ChEBI	citrate	+	carbon source
28951	28757 ChEBI	fructose	+	carbon source
28951	28260 ChEBI	galactose	+	carbon source
28951	17234 ChEBI	glucose	+	carbon source
28951	29987 ChEBI	glutamate	+	carbon source
28951	17754 ChEBI	glycerol	+	carbon source
28951	15428 ChEBI	glycine	+	carbon source
28951	25115 ChEBI	malate	+	carbon source
28951	17306 ChEBI	maltose	+	carbon source
28951	29864 ChEBI	mannitol	+	carbon source
28951	37684 ChEBI	mannose	+	carbon source
28951	506227 ChEBI	N-acetylglucosamine	+	carbon source
28951	26546 ChEBI	rhamnose	+	carbon source
28951	17814 ChEBI	salicin	+	carbon source
28951	17822 ChEBI	serine	+	carbon source
28951	30911 ChEBI	sorbitol	+	carbon source
28951	30031 ChEBI	succinate	+	carbon source
28951	17151 ChEBI	xylitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
28951	acid phosphatase	+	3.1.3.2
28951	catalase	+	1.11.1.6
28951	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Echinodermata

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
8308	sea urchin Hemicentrotus pulcherrimus	Hemicentrotus pulcherrimus	South China Sea	China	CHN	Asia
67771	From sea water		Guangdong Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU583727 (>99% sequence identity) for Jeotgalicoccus from Microbeatlas

Aquatic Samples	876
Soil Samples	1053
Animal Samples	10341
Plant Samples	462
Total Samples	12732

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8308	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42582v1 assembly for Jeotgalicoccus marinus DSM 19772	scaffold	GCA_000425825	1122128.4	2523533549	1122128	69.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8308	Jeotgalicoccus marinus strain JSM 076033 16S ribosomal RNA gene, partial sequence	EU583727	1459		516700
124043	Jeotgalicoccus sp. JSM 076033 16S ribosomal RNA gene, partial sequence.	FJ477403	750		516700

GC content

@ref	GC-content (mol%)	Method
8308	40.3	high performance liquid chromatography (HPLC)
28951	40.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM42582v1 assembly for Jeotgalicoccus marinus DSM 19772
NCBI: GCA_000425825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.75	no
125439	motility	BacteriaNetⓘ	yes	51.00	no
125439	gram_stain	BacteriaNetⓘ	variable	58.73	no
125439	spore_formation	BacteriaNetⓘ	yes	36.95	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Jeotgalicoccus marinus DSM 19772 DSM 19772
NCBI: GCA_000425825.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.54	yes
125438	anaerobic	anaerobicⓘ	no	96.04	yes
125438	aerobic	aerobicⓘ	yes	70.35	no
125438	spore-forming	spore-formingⓘ	no	80.47	yes
125438	thermophilic	thermophileⓘ	no	96.69	no
125438	flagellated	motile2+ⓘ	no	82.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Terminal olefin (1-alkene) biosynthesis by a novel p450 fatty acid decarboxylase from Jeotgalicoccus species.	Rude MA, Baron TS, Brubaker S, Alibhai M, Del Cardayre SB, Schirmer A.	Appl Environ Microbiol	10.1128/aem.02580-10	2011
Phylogeny	[Diversity of culturable bacteria associated with the sea urchin Hemicentrotus pulcherrimus from Naozhou Island].	Huang K, Zhang L, Liu Z, Chen Q, Peng Q, Li W, Cui X, Chen Y	Wei Sheng Wu Xue Bao		2009
Phylogeny	Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011.	Kampfer P, Busse HJ, Glaeser SP, Clermont D, Criscuolo A, Mietke H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004745	2021
Phylogeny	Jeotgalicoccus huakuii sp. nov., a halotolerant bacterium isolated from seaside soil.	Guo XQ, Li R, Zheng LQ, Lin DQ, Sun JQ, Li SP, Li WJ, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijs.0.013623-0	2009
Phylogeny	Jeotgalicoccus marinus sp. nov., a marine bacterium isolated from a sea urchin.	Chen YG, Zhang YQ, Shi JX, Xiao HD, Tang SK, Liu ZX, Huang K, Cui XL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.002451-0	2009

References

#8308	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19772
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25390	IJSEM 1625 2009 ( DOI 10.1099/ijs.0.002451-0 , PubMed 19542134 )
#28951	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25390
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Jeotgalicoccus marinus (DSM 19772, CCTCC AA 207028, KCTC 13189)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000425825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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