Name: Jeotgalicoccus marinus DSM 19772
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14413

Type strain:

Species: Jeotgalicoccus marinus

Culture col. no.: DSM 19772, CCTCC AA 207028, KCTC 13189, JSM 076033

Strain history: <- YG Chen, Yunnan Inst., China

NCBI tax ID(s): 1122128 (strain), 516700 (species)

SI-ID 408200

DSM 19772

Section

Jeotgalicoccus marinus DSM 19772 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from sea urchin Hemicentrotus pulcherrimus.

coccus-shaped
Gram-positive
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Jeotgalicoccus*
	Species	**Jeotgalicoccus marinus**
	Full Scientific Name (LPSN)	Jeotgalicoccus marinus Chen et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28951]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #28951]	Cell length	0.9 µm

[Ref.: #28951]	Cell shape	coccus-shaped
[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #28951]	Motility	no
[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8308]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8308]

Culture medium growth

[Ref.: #8308]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8308]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8308]	growth	28 °C
[Ref.: #28951]	growth	10-45 °C
[Ref.: #28951]	optimum	27.5 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #8308]	Temperature range	mesophilic
[Ref.: #28951]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28951]			optimum	7.5
[Ref.: #28951]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28951]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #28951]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.788

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28951]		NaCl		growth	0.5-25.0	%
[Ref.: #28951]		NaCl		optimum	7.5	%

[Ref.: #28951]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-7, MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28951]	alanine ChEBI	+	carbon source
[Ref.: #28951]	arabinose ChEBI	+	carbon source
[Ref.: #28951]	arginine ChEBI	+	carbon source
[Ref.: #28951]	asparagine ChEBI	+	carbon source
[Ref.: #28951]	cellobiose ChEBI	+	carbon source
[Ref.: #28951]	citrate ChEBI	+	carbon source
[Ref.: #28951]	fructose ChEBI	+	carbon source
[Ref.: #28951]	galactose ChEBI	+	carbon source
[Ref.: #28951]	glucose ChEBI	+	carbon source
[Ref.: #28951]	glutamate ChEBI	+	carbon source
[Ref.: #28951]	glycerol ChEBI	+	carbon source
[Ref.: #28951]	glycine ChEBI	+	carbon source
[Ref.: #28951]	malate ChEBI	+	carbon source
[Ref.: #28951]	maltose ChEBI	+	carbon source
[Ref.: #28951]	mannitol ChEBI	+	carbon source
[Ref.: #28951]	mannose ChEBI	+	carbon source
[Ref.: #28951]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #28951]	rhamnose ChEBI	+	carbon source
[Ref.: #28951]	salicin ChEBI	+	carbon source
[Ref.: #28951]	serine ChEBI	+	carbon source
[Ref.: #28951]	sorbitol ChEBI	+	carbon source
[Ref.: #28951]	succinate ChEBI	+	carbon source
[Ref.: #28951]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #28951]	acid phosphatase	+	3.1.3.2
[Ref.: #28951]	catalase	+	1.11.1.6
[Ref.: #28951]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8308]	Sample type/isolated from	sea urchin Hemicentrotus pulcherrimus
[Ref.: #8308]	Host species	Hemicentrotus pulcherrimus
[Ref.: #8308]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #8308]	Country	China
[Ref.: #8308]	Country ISO 3 Code	CHN
[Ref.: #8308]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sea water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Guangdong Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Echinodermata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU583727 (>99% sequence identity) for Jeotgalicoccus from Microbeatlas

Aquatic Samples	876
Soil Samples	1053
Animal Samples	10341
Plant Samples	462
Total Samples	12732

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8308]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8308]	Jeotgalicoccus marinus strain JSM 076033 16S ribosomal RNA gene, partial sequence	EU583727	1459	ENA	516700 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Jeotgalicoccus marinus DSM 19772	GCA_000425825	scaffold	GenBank	1122128 tax ID	*
[Ref.: #66792]	Jeotgalicoccus marinus DSM 19772	1122128.4	wgs	PATRIC	1122128 tax ID	*
[Ref.: #66792]	Jeotgalicoccus marinus DSM 19772	2523533549	draft	JGI IMG/M	1122128 tax ID	*

[Ref.: #8308]	GC-content	40.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #28951]	GC-content	40.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jeotgalicoccus marinus DSM 19772 DSM 19772 NCBI: GCA_000425825.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jeotgalicoccus marinus DSM 19772 DSM 19772 NCBI: GCA_000425825.1
[Ref.: #69480]	motile	no	89.59	no
[Ref.: #69480]	flagellated	no	95.911	yes
[Ref.: #69480]	gram-positive	yes	92.926	yes
[Ref.: #69480]	anaerobic	no	99.195	yes
[Ref.: #69480]	aerobic	yes	93.936	no
[Ref.: #69480]	halophile	yes	97.195	yes
[Ref.: #69480]	spore-forming	no	93.68	yes
[Ref.: #69480]	thermophile	no	99.808	yes
[Ref.: #69480]	glucose-util	yes	79.724	no
[Ref.: #69480]	glucose-ferment	no	64.369	no

Availability in culture collections External links

[Ref.: #8308]

Culture collection no.

DSM 19772, CCTCC AA 207028, KCTC 13189, JSM 076033

[Ref.: #83557]

SI-ID 408200

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalicoccus meleagridis sp. nov. isolated from bioaerosol from emissions of a turkey fattening plant and reclassification of Jeotgalicoccus halophilus Liu et al. 2011 as a later heterotypic synonym of Jeotgalicoccus aerolatus Martin et al. 2011.	Kampfer P, Busse HJ, Glaeser SP, Clermont D, Criscuolo A, Mietke H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004745	2021	*
Phylogeny	[Diversity of culturable bacteria associated with the sea urchin Hemicentrotus pulcherrimus from Naozhou Island].	Huang K, Zhang L, Liu Z, Chen Q, Peng Q, Li W, Cui X, Chen Y	Wei Sheng Wu Xue Bao		2009	*
Phylogeny	Jeotgalicoccus huakuii sp. nov., a halotolerant bacterium isolated from seaside soil.	Guo XQ, Li R, Zheng LQ, Lin DQ, Sun JQ, Li SP, Li WJ, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijs.0.013623-0	2009	*
Phylogeny	Jeotgalicoccus marinus sp. nov., a marine bacterium isolated from a sea urchin.	Chen YG, Zhang YQ, Shi JX, Xiao HD, Tang SK, Liu ZX, Huang K, Cui XL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.002451-0	2009	*

References

#8308

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19772

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28951

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25390 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83557

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408200.1 )

#25390

IJSEM 1625 2009 ( DOI 10.1099/ijs.0.002451-0 , PubMed 19542134 )

* These data were automatically processed and therefore are not curated

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Jeotgalicoccus marinus DSM 19772 DSM 19772

Jeotgalicoccus marinus DSM 19772 DSM 19772

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