Name: Sporolactobacillus terrae M-116
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14399

Type strain:

Species: Sporolactobacillus terrae

Strain Designation: M-116

Culture col. no.: CCUG 41658, CIP 105317, DSM 11697, JCM 3516, ATCC 700380, IAM 14264, LMG 18887, NBRC 101527

Strain history: CIP <- 1997, F. Yanagida, Yamanashi Univ., Japan: strain M-116 <- O. Nakayama

NCBI tax ID(s): 1444306 (strain), 269673 (species)

SI-ID 12447

LMG 18887, JCM 3516, ATCC 700380, DSM 11697, CIP 105317, CCUG 41658, BCRC 17104, CCRC 17104, IAM 14264, KCTC 5031, NBRC 101527

Special Collections

Other strains from Sporolactobacillus terrae

Section

When using BacDive for research please cite our paper

Sporolactobacillus terrae M-116 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from rhizosphere.

Gram-positive
motile
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Sporolactobacillaceae*
	Genus	*Sporolactobacillus*
	Species	**Sporolactobacillus terrae**
	Full Scientific Name (LPSN)	Sporolactobacillus terrae Yanagida et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #123464]	Gram stain	positive

[Ref.: #123464]	Cell shape	rod-shaped

[Ref.: #123464]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4448]

Culture medium

GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852)

[Ref.: #4448]

Culture medium growth

[Ref.: #4448]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4448]

Culture medium composition

expand / minimize

[Ref.: #39261]

Culture medium

MEDIUM 217 - for Sporolactobacillus

[Ref.: #39261]

Culture medium growth

[Ref.: #39261]

Culture medium composition

expand / minimize

[Ref.: #4448]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #4448]

Culture medium growth

[Ref.: #4448]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4448]

Culture medium composition

expand / minimize

[Ref.: #123464]

Culture medium

CIP Medium 260

[Ref.: #123464]

Culture medium growth

[Ref.: #123464]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123464]

Culture medium

CIP Medium 217

[Ref.: #123464]

Culture medium growth

[Ref.: #123464]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4448]		growth	30 °C
[Ref.: #39261]		growth	30 °C
[Ref.: #55162]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #123464]		growth	15-30 °C
[Ref.: #123464]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4448]	Oxygen tolerance	microaerophile
[Ref.: #55162]	Oxygen tolerance	microaerophile
[Ref.: #123464]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %97.3

	Salt	Tested relation		Salt conc.
[Ref.: #123464]	NaCl		growth	0-4	%
[Ref.: #123464]	NaCl	no	growth	6	%
[Ref.: #123464]	NaCl	no	growth	8	%
[Ref.: #123464]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123464]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123464]	nitrate ChEBI	-	reduction
[Ref.: #123464]	nitrate ChEBI	+	respiration
[Ref.: #123464]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123464]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123464]	amylase	-
[Ref.: #123464]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123464]	caseinase	-	3.4.21.50
[Ref.: #123464]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123464]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #123464]	gelatinase	-
[Ref.: #123464]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123464]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123464]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123464]	tween esterase	-
[Ref.: #123464]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123464]	10038	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+/-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	-	+	+/-	+/-	-	-	+	-	+/-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123464]	8613	-	-	+	-	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4448]	Sample type/isolated from	rhizosphere

[Ref.: #55162]	Sample type/isolated from	Soil

[Ref.: #123464]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4448]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123464]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sporolactobacillus terrae genes for 16S rRNA, ITS1, 23S rRNA, partial and complete sequence, strain: DSM 11697	AB231796	628	GenBank ENA	269673 tax ID	*
[Ref.: #20218]	Sporolactobacillus terrae genes for 16S rRNA, ITS2, 23S rRNA, partial and complete sequence, strain: DSM 11697	AB231797	594	GenBank ENA	269673 tax ID	*
[Ref.: #20218]	Sporolactobacillus terrae gene for 16S rRNA, type strain DSM 11697T	AJ634662	1521	GenBank ENA	269673 tax ID	*
[Ref.: #20218]	Sporolactobacillus terrae gene for 16S ribosomal RNA, partial sequence	AB374520	1501	GenBank ENA	269673 tax ID	*
[Ref.: #20218]	Sporolactobacillus terrae gene for 16S rRNA, partial sequence, strain: M-116	D16289	1483	GenBank ENA	269673 tax ID	*
[Ref.: #20218]	Sporolactobacillus terrae gene for 16S rRNA, partial sequence	AB371637	1474	GenBank ENA	269673 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sporolactobacillus terrae DSM 11697	GCA_000648615	contig	GenBank ENA	1444306 tax ID
[Ref.: #66792]	Sporolactobacillus terrae DSM 11697	1444306.3	wgs	PATRIC	1444306 tax ID	*
[Ref.: #66792]	Sporolactobacillus terrae DSM 11697	2711768088	draft	JGI IMG/M	1444306 tax ID	*

[Ref.: #67770]

GC-content

44.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporolactobacillus terrae DSM 11697 PATRIC: 1444306.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	83.633	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	77.235	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	84.218	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	82.2	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	90.268	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	79.455	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporolactobacillus terrae DSM 11697 NCBI: GCA_000648615
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	53.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	57.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	71.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.3

Availability in culture collections External links

[Ref.: #4448]

Culture collection no.

CCUG 41658, CIP 105317, DSM 11697, JCM 3516, ATCC 700380, IAM 14264, LMG 18887, NBRC 101527

[Ref.: #83543]

SI-ID 12447

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sporolactobacillus shoreicorticis sp.nov., a lactic acid-producing bacterium isolated from tree bark.	Tolieng V, Prasirtsak B, Miyashita M, Shibata C, Tanaka N, Thongchul N, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001959	2017	*
Phylogeny	Scopulibacillus daqui sp. nov., a thermophilic bacterium isolated from high temperature daqu.	Yao S, Zhai L, Xin C, Liu Y, Xu L, Zhang X, Zhao T, Zhang L, Cheng C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001417	2016	*
Genetics	Genome Sequence of Sporolactobacillus terrae DSM 11697, the Type Strain of the Species.	Huang K, Ni J, Xu K, Tang H, Tao F, Xu P	Genome Announc	10.1128/genomeA.00465-14	2014	*

References

#4448

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11697

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39261 ; Curators of the CIP;
#55162 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41658

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#83543

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12447.1 )

#123464 Collection of Institut Pasteur ; Curators of the CIP; CIP 105317

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Sporolactobacillus terrae DSM 11697

Sporolactobacillus terrae DSM 11697

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