Sporolactobacillus terrae (CCUG 41658, CIP 105317, DSM 11697)

Name: Sporolactobacillus terrae (CCUG 41658, CIP 105317, DSM 11697)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14399

Type strain

Strain Designation M-116

Culture col. no. CCUG 41658 CIP 105317 DSM 11697 JCM 3516 M-116 4 more

NCBI tax ID(s) 1444306 269673

Special Collections DSMZ CCUG JCM CIP

History <- F. Yanagida; M-116 F. Yanagida <-- IAM 14264 <-- O. Nakayama M-116. CIP <- 1997, F. Yanagida, Yamanashi Univ., Japan: strain M-116 <- O. Nakayama

Links

Sporolactobacillus terrae M-116 is a microaerophile, Gram-positive, motile bacterium that was isolated from rhizosphere.

Gram-positive motile rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 12447

LMG 18887,JCM 3516,ATCC 700380,DSM 11697,CIP 105317,CCUG 41658,BCRC 17104,CCRC 17104,IAM 14264,KCTC 5031,NBRC 101527

@ref 20215

Last LPSN update 2026-02-09 11:21:24

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Sporolactobacillaceae

Genus Sporolactobacillus

Species Sporolactobacillus terrae

Full scientific name Sporolactobacillus terrae Yanagida et al. 1997

BacDive ID	Other strains from **Sporolactobacillus terrae** (7)	Type strain
164736	S. terrae JCM 3416, IAM 12395, IAM 14743
164753	S. terrae JCM 3432, IAM 14744
164756	S. terrae JCM 3433, IAM 12397
164769	S. terrae JCM 3461, IAM 14745
164771	S. terrae JCM 3485, IAM 14746
164777	S. terrae JCM 3499, IAM 14747
164780	S. terrae JCM 3515, CGMCC 1.3846, IAM 14748

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
123464	positive	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4448	GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852)	Medium recipe at MediaDive	Name: GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852) Composition: Glucose 20.0 g/l Yeast extract 10.0 g/l Peptone 10.0 g/l Na-acetate 10.0 g/l Agar 10.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x 4 H2O 0.01 g/l FeSO4 x 7 H2O 0.01 g/l NaCl 0.01 g/l Distilled water
39261	MEDIUM 217 - for Sporolactobacillus		Distilled water make up to (1000.000 ml);Sodium chloride (0.100 g);Manganese II sulphate monohydrate (0.160 g);Magnesium sulphate heptahydrate (2.000 g);Glucose (20.000 g);Yeast extract (10.000 g);Peptone (10.000 g);Sodium acetate (10.000 g);Iron (III) su
4448	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
123464	CIP Medium 260	Medium recipe at CIP
123464	CIP Medium 217	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4448	positive	growth	30
39261	positive	growth	30
55162	positive	growth	37
67770	positive	growth	30
123464	positive	growth	15-30
123464	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4448	microaerophile
55162	microaerophile
123464	facultative anaerobe
125439	obligate aerobe	97.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123464	NaCl	positive	growth	0-4 %
123464	NaCl		growth	6 %
123464	NaCl		growth	8 %
123464	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
123464	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	+	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
123464	17632 ChEBI	nitrate	-	reduction
123464	17632 ChEBI	nitrate	+	respiration
123464	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123464	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123464	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
123464	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123464	caseinase	-	3.4.21.50
123464	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123464	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
123464	gelatinase	-
123464	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123464	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123464	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
123464	tween esterase	-
123464	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123464	-	-	+	-	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123464	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+/-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	-	+	+/-	+/-	-	-	+	-	+/-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type
4448	rhizosphere
55162	Soil
123464	Environment, Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4448	1	Risk group (German classification) According to TRBA 466
123464	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	DSM 11697 assembly for Sporolactobacillus terrae DSM 11697	contig	GCA_000648615	1444306.3	2711768088	1444306	47.84

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Sporolactobacillus terrae genes for 16S rRNA, ITS1, 23S rRNA, partial and complete sequence, strain: DSM 11697	AB231796	628	269673
20218	Sporolactobacillus terrae genes for 16S rRNA, ITS2, 23S rRNA, partial and complete sequence, strain: DSM 11697	AB231797	594	269673
20218	Sporolactobacillus terrae gene for 16S rRNA, type strain DSM 11697T	AJ634662	1521	269673
20218	Sporolactobacillus terrae gene for 16S ribosomal RNA, partial sequence	AB374520	1501	269673
20218	Sporolactobacillus terrae gene for 16S rRNA, partial sequence, strain: M-116	D16289	1483	269673
20218	Sporolactobacillus terrae gene for 16S rRNA, partial sequence	AB371637	1474	269673

GC content

@ref	GC-content (mol%)	Method
67770	44.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporolactobacillus terrae DSM 11697
NCBI: GCA_000648615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	53.30	no
125439	motility	BacteriaNetⓘ	yes	57.40	no
125439	gram_stain	BacteriaNetⓘ	variable	71.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporolactobacillus terrae DSM 11697
PATRIC: 1444306.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.63	no
125438	anaerobic	anaerobicⓘ	no	77.24	no
125438	spore-forming	spore-formingⓘ	yes	84.22	no
125438	aerobic	aerobicⓘ	no	82.20	yes
125438	thermophilic	thermophileⓘ	no	90.27	yes
125438	flagellated	motile2+ⓘ	yes	79.46	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A Sporolactobacillus-, Clostridium-, and Paenibacillus- Dominant Microbial Consortium Improved Anaerobic RDX Detoxification by Starch Addition.	Khan MI, Yoo K, Kim S, Cheema SA, Bashir S, Park J.	J Microbiol Biotechnol	10.4014/jmb.1910.10034	2020
Genetics	Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.	Gonzalez-Salazar LA, Quezada M, Rodriguez-Orduna L, Ramos-Aboites H, Capon RJ, Souza-Saldivar V, Barona-Gomez F, Licona-Cassani C.	Microb Genom	10.1099/mgen.0.000921	2023
Metabolism	Arsinothricin, an arsenic-containing non-proteinogenic amino acid analog of glutamate, is a broad-spectrum antibiotic.	Nadar VS, Chen J, Dheeman DS, Galvan AE, Yoshinaga-Sakurai K, Kandavelu P, Sankaran B, Kuramata M, Ishikawa S, Rosen BP, Yoshinaga M, Yoshinaga M.	Commun Biol	10.1038/s42003-019-0365-y	2019
Phylogeny	Sporolactobacillus shoreicorticis sp.nov., a lactic acid-producing bacterium isolated from tree bark.	Tolieng V, Prasirtsak B, Miyashita M, Shibata C, Tanaka N, Thongchul N, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001959	2017
Genetics	Genome Sequence of Sporolactobacillus terrae DSM 11697, the Type Strain of the Species.	Huang K, Ni J, Xu K, Tang H, Tao F, Xu P	Genome Announc	10.1128/genomeA.00465-14	2014
	Sporolactobacillus mangiferae sp. nov., a spore-forming lactic acid bacterium isolated from tree bark in Thailand.	Phuengjayaem S, Poothong S, Sitdhipol J, Chaiyawan N, Thitiprasert S, Thongchul N, Tanasupawat S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005993	2023
Phylogeny	Scopulibacillus daqui sp. nov., a thermophilic bacterium isolated from high temperature daqu.	Yao S, Zhai L, Xin C, Liu Y, Xu L, Zhang X, Zhao T, Zhang L, Cheng C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001417	2016

References

#4448	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11697
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39261	; Curators of the CIP;
#55162	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41658
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#123464	Collection of Institut Pasteur ; Curators of the CIP; CIP 105317
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporolactobacillus terrae (CCUG 41658, CIP 105317, DSM 11697)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000648615

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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