[Ref.: #4447] |
Sample type/isolated from |
rhizosphere |
|
[Ref.: #55164] |
Sample type/isolated from |
Soil |
|
[Ref.: #121225] |
Sample type/isolated from |
Environment, Soil |
* marker position based on {}
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Isolation sources categories |
#Host Body-Site |
#Plant |
#Rhizosphere |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Sporolactobacillus nakayamae subsp. nakayamae genes for 16S rRNA, ITS1, 23S rRNA, partial and complete sequence, strain: DSM 11696 |
AB231794 |
464 |
|
269671 tax ID |
* |
[Ref.: #20218] |
Sporolactobacillus nakayamae subsp. nakayamae genes for 16S rRNA, ITS2, 23S rRNA, partial and complete sequence, strain: DSM 11696 |
AB231795 |
464 |
|
269671 tax ID |
* |
[Ref.: #20218] |
Sporolactobacillus nakayamae subsp. nakayamae gene for 16S rRNA, type strain DSM 11696T |
AJ634663 |
1518 |
|
269671 tax ID |
* |
[Ref.: #20218] |
Sporolactobacillus laevis gene for 16S rRNA, partial sequence, strain: IAM 12388 |
D16286 |
1483 |
|
269671 tax ID |
* |
[Ref.: #20218] |
Sporolactobacillus nakayamae subsp. nakayamae gene for 16S ribosomal RNA, partial sequence |
AB374518 |
1501 |
|
269671 tax ID |
* |
[Ref.: #20218] |
Sporolactobacillus nakayamae subsp. nakayamae gene for 16S rRNA, partial sequence, strain: NBRC 101526 |
AB681467 |
1474 |
|
269671 tax ID |
* |
|
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Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Sporolactobacillus nakayamae ATCC 700379 |
GCA_900113325 |
scaffold |
|
269670 tax ID |
[Ref.: #66792] |
Sporolactobacillus nakayamae strain ATCC 700379 |
269670.4 |
wgs |
|
269670 tax ID |
* |
[Ref.: #66792] |
Sporolactobacillus nakayamae ATCC 700379 |
2597490367 |
draft |
|
269670 tax ID |
* |
|
[Ref.: #67770] |
GC-content |
44.8 mol% |
thermal denaturation, midpoint method (Tm) |
|
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Availability in culture collections External links
- References
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#4447 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 11696
|
-
-
-
#39263 |
; Curators of the CIP;
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-
#55164 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 41660
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68371 |
Automatically annotated from API 50CH acid .
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-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
-
#83542 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID14065.1 )
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-
#121225 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 105319
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- * These data were automatically processed and therefore are not curated
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