Campylobacter upsaliensis (CCUG 19559)

Name: Campylobacter upsaliensis (CCUG 19559)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 143500

Type strain

Culture col. no. CCUG 19559

NCBI tax ID(s) 28080

Special Collections CCUG

Links

Campylobacter upsaliensis CCUG 19559 is a bacterium that was isolated from Human feces.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 52420

CCUG 19559

@ref 20215

Last LPSN update 2026-05-29 08:40:27

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter upsaliensis

Full scientific name Campylobacter upsaliensis Sandstedt and Ursing 1991

BacDive ID	Other strains from **Campylobacter upsaliensis** (60)	Type strain
2126	C. upsaliensis Ursing C231, C231, LMG 7796, KCTC 15213, ... (type strain)
143502	C. upsaliensis CCUG 19607
143503	C. upsaliensis CCUG 19608
143504	C. upsaliensis CCUG 19609
143639	C. upsaliensis CCUG 20695
143640	C. upsaliensis CCUG 20696
143641	C. upsaliensis CCUG 20697
143649	C. upsaliensis CCUG 20818, LMG 7915
143650	C. upsaliensis CCUG 20819
144100	C. upsaliensis CCUG 23017
144188	C. upsaliensis CCUG 23393
144189	C. upsaliensis CCUG 23394
144210	C. upsaliensis CCUG 23624
144211	C. upsaliensis CCUG 23625
144212	C. upsaliensis CCUG 23626
144228	C. upsaliensis CCUG 23806, LMG 7534
144294	C. upsaliensis CCUG 24191, LMG 7916
144319	C. upsaliensis CCUG 24571, LMG 8854
144320	C. upsaliensis CCUG 24572, LMG 8855
144321	C. upsaliensis CCUG 24573, LMG 8856
144322	C. upsaliensis CCUG 24574, LMG 8857
144323	C. upsaliensis CCUG 24575, LMG 8858
144324	C. upsaliensis CCUG 24576, LMG 8859
144325	C. upsaliensis CCUG 24577, LMG 8860
144326	C. upsaliensis CCUG 24578, LMG 8861
144327	C. upsaliensis CCUG 24579, LMG 8862
144328	C. upsaliensis CCUG 24580, LMG 8863
144329	C. upsaliensis CCUG 24581, LMG 8864
144330	C. upsaliensis CCUG 24582, LMG 8865
144331	C. upsaliensis CCUG 24583, LMG 8866
144332	C. upsaliensis CCUG 24584, LMG 8867
144679	C. upsaliensis CCUG 26160, LMG 9105
144680	C. upsaliensis CCUG 26161, LMG 9114
144681	C. upsaliensis CCUG 26162, LMG 9125
144682	C. upsaliensis CCUG 26163, LMG 9131
144683	C. upsaliensis CCUG 26164, LMG 9139
147609	C. upsaliensis CCUG 33880
147610	C. upsaliensis CCUG 33884
147613	C. upsaliensis CCUG 33888
147614	C. upsaliensis CCUG 33890
147646	C. upsaliensis CCUG 33947
147695	C. upsaliensis CCUG 34019
147696	C. upsaliensis CCUG 34023
147701	C. upsaliensis CCUG 34040
147702	C. upsaliensis CCUG 34041
147723	C. upsaliensis CCUG 34091
147725	C. upsaliensis CCUG 34097
148317	C. upsaliensis CCUG 35215
148339	C. upsaliensis CCUG 35250
148371	C. upsaliensis CCUG 35304
148383	C. upsaliensis CCUG 35328
148384	C. upsaliensis CCUG 35329
149948	C. upsaliensis CCUG 38740
150595	C. upsaliensis CCUG 41700
151730	C. upsaliensis CCUG 44744
152602	C. upsaliensis CCUG 47176
153210	C. upsaliensis CCUG 48767
156561	C. upsaliensis CCUG 62697 Q
156603	C. upsaliensis CCUG 63440
174276	C. upsaliensis C303, CIP 111243, CCUG 24803, NCTC 11540, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.583
125438	negative	97.955

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
47036	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.691
125438		94.432

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	30089 ChEBI	acetate	-	assimilation	from API CAM
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68373	17632 ChEBI	nitrate	-	reduction	from API CAM
68373	17272 ChEBI	propionate	-	assimilation	from API CAM
68373	30031 ChEBI	succinate	+	assimilation	from API CAM
68373	78019 ChEBI	triphenyltetrazolium chloride	-	reduction	from API CAM
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM

Enzymes

@ref	Value	Activity	Ec
68373	alkaline phosphatase	+	3.1.3.1	from API CAM
68373	esterase	+		from API CAM
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	+	3.4.11.21	from API CAM
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68373	urease	-	3.5.1.5	from API CAM

Fatty acid profile

Metadata FA analysis

@ref

47036

Fatty acid	Percentage	ECL
C16:0	39.4	16
C18:1 ω7c /12t/9t	31.8	17.824
C19:0 CYCLO ω8c	8.4	18.9
C14:0	6.9	14
C14:0 3OH/C16:1 ISO I	6.6	15.485
C16:1 ω7c	4.6	15.819
C18:0	0.5	18
unk. 18.846/19:1 ω6c	0.5	18.846
unknown 14.503	0.5	14.503
C18:2 ω6,9c/C18:0 ANTE	0.3	17.724
C16:1 ω5c	0.2	15.908
C13:0 ISO 2OH	0.2	13.814
C18:1 ω9c	0.2	17.769

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
47036	-	-	+	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
47036	Human feces	Homo sapiens	1986	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2462094v1 assembly for Campylobacter upsaliensis CCUG 19559	contig	GCA_024620945	28080.125	28080	52.93

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2462094v1 assembly for Campylobacter upsaliensis CCUG 19559
NCBI: GCA_024620945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	57.25	no
125439	motility	BacteriaNetⓘ	no	77.23	no
125439	gram_stain	BacteriaNetⓘ	negative	98.58	no
125439	spore_formation	BacteriaNetⓘ	no	99.69	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter upsaliensis CCUG 19559
NCBI: GCA_024620945.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.96	no
125438	anaerobic	anaerobicⓘ	no	84.20	no
125438	aerobic	aerobicⓘ	no	91.73	no
125438	spore-forming	spore-formingⓘ	no	94.43	no
125438	thermophilic	thermophileⓘ	no	86.49	yes
125438	flagellated	motile2+ⓘ	yes	64.97	no

Literature

Title	Authors	Journal	DOI	Year
Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus.	Miller WG, On SL, Wang G, Fontanoz S, Lastovica AJ, Mandrell RE.	J Clin Microbiol	10.1128/jcm.43.5.2315-2329.2005	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47036	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19559
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Campylobacter upsaliensis (CCUG 19559)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024620945

Genome-based predictions

Predictions

Literature

Literature

References

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