Strain identifier
version 8.1 (current version)
General
@ref: 47036
BacDive-ID: 143500
keywords: genome sequence, Bacteria, mesophilic
description: Campylobacter upsaliensis CCUG 19559 is a mesophilic bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 28080
- Matching level: species
doi: 10.13145/bacdive143500.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter upsaliensis
- full scientific name: Campylobacter upsaliensis Sandstedt and Ursing 1991
@ref: 47036
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter upsaliensis
type strain: no
Culture and growth conditions
culture temp
- @ref: 47036
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68373 | 16199 | urea | - | hydrolysis |
| 68373 | 17632 | nitrate | - | reduction |
| 68373 | 606565 | hippurate | - | hydrolysis |
| 68373 | 78019 | triphenyltetrazolium chloride | - | reduction |
| 68373 | 17634 | D-glucose | - | assimilation |
| 68373 | 30031 | succinate | + | assimilation |
| 68373 | 30089 | acetate | - | assimilation |
| 68373 | 17272 | propionate | - | assimilation |
| 68373 | 25115 | malate | - | assimilation |
| 68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
| @ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. |
|---|---|---|---|---|---|
| 68373 | 48923 | erythromycin | yes | yes | 14 µg |
| 68373 | 474053 | cefazolin | yes | yes | 224 µg |
| 68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
metabolite production
- @ref: 68373
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68373 | alkaline phosphatase | + | 3.1.3.1 |
| 68373 | L-aspartate arylamidase | + | 3.4.11.21 |
| 68373 | L-arginine arylamidase | - | |
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68373 | gamma-glutamyltransferase | - | 2.3.2.2 |
| 68373 | esterase | + | |
| 68373 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 47036 C14:0 6.9 14 47036 C16:0 39.4 16 47036 C18:0 0.5 18 47036 C13:0 ISO 2OH 0.2 13.814 47036 C14:0 3OH/C16:1 ISO I 6.6 15.485 47036 C16:1 ω5c 0.2 15.908 47036 C16:1 ω7c 4.6 15.819 47036 C18:1 ω7c /12t/9t 31.8 17.824 47036 C18:1 ω9c 0.2 17.769 47036 C18:2 ω6,9c/C18:0 ANTE 0.3 17.724 47036 C19:0 CYCLO ω8c 8.4 18.9 47036 unk. 18.846/19:1 ω6c 0.5 18.846 47036 unknown 14.503 0.5 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API CAM
| @ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47036 | - | - | + | - | - | - | - | - | + | + | - | - | + | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 47036
- sample type: Human feces
- sampling date: 1986
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 66792
- description: Campylobacter upsaliensis CCUG 19559
- accession: GCA_024620945
- assembly level: contig
- database: ncbi
- NCBI tax ID: 28080
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 57.333 | no |
| gram-positive | no | 99.018 | no |
| anaerobic | no | 87.547 | no |
| aerobic | no | 97.523 | no |
| halophile | no | 88.109 | no |
| spore-forming | no | 96.441 | no |
| motile | yes | 91.918 | no |
| glucose-ferment | no | 85.841 | no |
| glucose-util | no | 90.981 | yes |
| thermophile | no | 73.658 | yes |
External links
@ref: 47036
culture collection no.: CCUG 19559
straininfo link
- @ref: 98855
- straininfo: 52420
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 47036 | Curators of the CCUG | https://www.ccug.se/strain?id=19559 | Culture Collection University of Gothenburg (CCUG) (CCUG 19559) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68373 | Automatically annotated from API CAM | |||
| 98855 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID52420.1 |