Campylobacter upsaliensis Ursing C231 is a microaerophile, mesophilic, rod-shaped prokaryote that was isolated from faeces.
rod-shaped microaerophile mesophilic genome sequence 16S sequence| @ref 20215 |
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|
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Epsilonproteobacteria |
| Order Campylobacterales |
| Family Campylobacteraceae |
| Genus Campylobacter |
| Species Campylobacter upsaliensis |
| Full scientific name Campylobacter upsaliensis Sandstedt and Ursing 1991 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2005 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 38135 | MEDIUM 6 - Columbia agar with 10 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |||
| 123733 | CIP Medium 6 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68373 | 30089 ChEBI | acetate | - | assimilation | from API CAM |
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68373 | 16947 ChEBI | citrate | - | assimilation | from API CAM |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 123733 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68373 | 25115 ChEBI | malate | - | assimilation | from API CAM |
| 123733 | 17632 ChEBI | nitrate | + | reduction | |
| 68380 | 17632 ChEBI | nitrate | + | reduction | from API rID32A |
| 123733 | 16301 ChEBI | nitrite | - | reduction | |
| 68373 | 17272 ChEBI | propionate | - | assimilation | from API CAM |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68373 | 30031 ChEBI | succinate | - | assimilation | from API CAM |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68373 | 16199 ChEBI | urea | - | hydrolysis | from API CAM |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Chebi-ID | Metabolite | Indole test | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | - | 3.4.11.2 | from API rID32A |
| 68380 | alkaline phosphatase | + | 3.1.3.1 | from API rID32A |
| 68373 | alkaline phosphatase | + | 3.1.3.1 | from API CAM |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | - | 3.2.1.20 | from API rID32A |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 2005 | catalase | + | 1.11.1.6 | |
| 123733 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 2005 | cytochrome-c oxidase | + | 1.9.3.1 | |
| 68373 | gamma-glutamyltransferase | - | 2.3.2.2 | from API CAM |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 123733 | oxidase | + | ||
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API CAM |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 123733 | urease | - | 3.5.1.5 | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68373 | urease | - | 3.5.1.5 | from API CAM |
| 68382 | valine arylamidase | - | from API zym |
| @ref | URE | Reduction of nitrateNIT | EsteraseEST | HIP | GGT | TTC | PYRA | L-arginine arylamidaseArgA | L-aspartic acid arylamidaseAspA | PAL | H2S productionH2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | Erythromycin resistance (+) sensitivity (-)ERO | CAT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2005 | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | |
| 2005 | - | + | + | - | - | + | - | - | +/- | + | - | - | - | - | - | - | - | - | - | - | - | |
| 2005 | - | + | + | - | - | + | - | - | +/- | + | - | - | - | - | - | - | - | - | - | - | + | |
| 2005 | - | + | + | - | - | - | - | - | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | - | |
| 2005 | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | not determinedn.d. | |
| 2005 | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | not determinedn.d. | |
| 2005 | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | |
| 2005 | - | + | + | - | - | + | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | |
| 2005 | - | + | - | - | - | + | - | + | + | + | - | + | - | - | - | - | - | - | - | - | + | |
| 2005 | - | + | - | - | - | +/- | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | |
| 2005 | - | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | |
| 2005 | - | + | +/- | +/- | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | not determinedn.d. | |
| 2005 | - | + | + | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | not determinedn.d. |
Global distribution of 16S sequence NR_043602 (>99% sequence identity) for Campylobacter from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 50648_G01 assembly for Campylobacter upsaliensis NCTC11541 | complete | 28080 | 96.59 | ||||
| 66792 | Campylobacter upsaliensis strain Campylobacter upsaliensis CCUG 14913 | complete | 28080 | 92.41 | ||||
| 66792 | Campylobacter upsaliensis strain Campylobacter upsaliensis CCUG 14913 | complete | 28080 | 92.41 | ||||
| 66792 | Campylobacter upsaliensis strain Campylobacter upsaliensis CCUG 14913 | complete | 28080 | 92.41 | ||||
| 66792 | Campylobacter upsaliensis strain Campylobacter upsaliensis 17-M197059 | complete | 28080 | 92.3 | ||||
| 66792 | Campylobacter upsaliensis strain Campylobacter upsaliensis 17-M197059 | complete | 28080 | 92.3 | ||||
| 66792 | Campylobacter upsaliensis strain Campylobacter upsaliensis 17-M197059 | complete | 28080 | 92.3 | ||||
| 124043 | ASM2029760v1 assembly for Campylobacter upsaliensis FDAARGOS_1518 | contig | 28080 | 73.76 | ||||
| 66792 | Cu-17-M197059 assembly for Campylobacter upsaliensis Campylobacter upsaliensis 17-M197059 | complete | 28080 | 71.51 | ||||
| 67771 | ASM62096v1 assembly for Campylobacter upsaliensis DSM 5365 | scaffold | 1121269 | 69.55 | ||||
| 66792 | Cu-CCUG14913 assembly for Campylobacter upsaliensis Campylobacter upsaliensis CCUG 14913 | complete | 28080 | 68.91 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Campylobacter upsaliensis strain LMG 8850 16S ribosomal RNA gene, partial sequence | AF497805 | 1428 | 28080 | ||
| 20218 | Campylobacter upsaliensis strain ATCC 43954 16S ribosomal RNA gene, partial sequence | AY621113 | 1442 | 28080 | ||
| 20218 | Campylobacter upsaliensis strain CCUG 14913 16S ribosomal RNA (rrs) gene, partial sequence | DQ174157 | 1341 | 28080 | ||
| 20218 | Campylobacter upsaliensis strain NCTC 11541 16S ribosomal RNA gene, partial sequence | JX912527 | 1435 | 28080 | ||
| 2005 | Campylobacter upsaliensis 16S ribosomal RNA | L14628 | 1460 | 28080 | ||
| 67771 | Campylobacter upsaliensis strain CCUG 14913 16S ribosomal RNA, partial sequence | NR_043602 | 1341 | 28080 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 2005 | 33.5 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 77.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 95.90 | no |
| 125439 | motility | BacteriaNetⓘ | no | 69.80 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.96 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 83.46 | yes |
| 125438 | aerobic | aerobicⓘ | no | 91.92 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 93.71 | no |
| 125438 | thermophilic | thermophileⓘ | no | 86.08 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 66.47 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genomic analysis of the diversity, antimicrobial resistance and virulence potential of clinical Campylobacter jejuni and Campylobacter coli strains from Chile. | Bravo V, Katz A, Porte L, Porte L, Weitzel T, Varela C, Gonzalez-Escalona N, Blondel CJ. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0009207 | 2021 | |
| Genetics | Insights into Xylan Degradation and Haloalkaline Adaptation through Whole-Genome Analysis of Alkalitalea saponilacus, an Anaerobic Haloalkaliphilic Bacterium Capable of Secreting Novel Halostable Xylanase. | Liao Z, Holtzapple M, Yan Y, Wang H, Li J, Zhao B. | Genes (Basel) | 10.3390/genes10010001 | 2018 | |
| Pathogenicity | Population Genetics and Antimicrobial Susceptibility of Canine Campylobacter Isolates Collected before and after a Raw Feeding Experiment. | Olkkola S, Kovanen S, Roine J, Hanninen ML, Hielm-Bjorkman A, Kivisto R. | PLoS One | 10.1371/journal.pone.0132660 | 2015 | |
| High-resolution genotyping of Campylobacter upsaliensis strains originating from three continents. | Lentzsch P, Rieksneuwohner B, Wieler LH, Hotzel H, Moser I. | J Clin Microbiol | 10.1128/jcm.42.8.3441-3448.2004 | 2004 | ||
| Genomic heterogeneity and O-antigenic diversity of Campylobacter upsaliensis and Campylobacter helveticus strains isolated from dogs and cats in Germany. | Moser I, Rieksneuwohner B, Lentzsch P, Schwerk P, Wieler LH. | J Clin Microbiol | 10.1128/jcm.39.7.2548-2557.2001 | 2001 | ||
| Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance. | Kojima KK, Kobayashi I. | BMC Genomics | 10.1186/s12864-015-2021-3 | 2015 | ||
| Metabolism | Campylobacter upsaliensis isolated from dogs produces high titer of cytolethal distending toxin. | Somroop S, Hatanaka N, Awasthi SP, Okuno K, Asakura M, Hinenoya A, Yamasaki S. | J Vet Med Sci | 10.1292/jvms.16-0654 | 2017 | |
| Development and Evaluation of Fluorescence Immunochromatography for Rapid and Sensitive Detection of Thermophilic Campylobacter. | Asakura H, Sakata J, Sasaki Y, Kawatsu K. | Food Saf (Tokyo) | 10.14252/foodsafetyfscj.d-21-00006 | 2021 | ||
| Evaluation of the Vibrant DNA microarray for the high-throughput multiplex detection of enteric pathogens in clinical samples. | Yang Y, Rajendran V, Jayaraman V, Wang T, Bei K, Krishna K, Rajasekaran K, Rajasekaran JJ, Krishnamurthy H. | Gut Pathog | 10.1186/s13099-019-0329-2 | 2019 | ||
| Pathogenicity | Basis of the superiority of cefoperazone amphotericin teicoplanin for isolating Campylobacter upsaliensis from stools. | Byrne C, Doherty D, Mooney A, Byrne M, Woodward D, Johnson W, Rodgers F, Bourke B. | J Clin Microbiol | 10.1128/jcm.39.7.2713-2716.2001 | 2001 | |
| Phylogeny | Differentiation of Campylobacter coli, Campylobacter jejuni, Campylobacter lari, and Campylobacter upsaliensis by a multiplex PCR developed from the nucleotide sequence of the lipid A gene lpxA. | Klena JD, Parker CT, Knibb K, Ibbitt JC, Devane PM, Horn ST, Miller WG, Konkel ME. | J Clin Microbiol | 10.1128/jcm.42.12.5549-5557.2004 | 2004 | |
| Phylogeny | Identification of Campylobacter jejuni, C. coli, C. lari, C. upsaliensis, arcobacter butzleri, and A. butzleri-like species based on the glyA gene. | Al Rashid ST, Dakuna I, Louie H, Ng D, Vandamme P, Johnson W, Chan VL. | J Clin Microbiol | 10.1128/jcm.38.4.1488-1494.2000 | 2000 | |
| Phylogeny | Rapid identification of Campylobacter, Arcobacter, and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene. | Marshall SM, Melito PL, Woodward DL, Johnson WM, Rodgers FG, Mulvey MR. | J Clin Microbiol | 10.1128/jcm.37.12.4158-4160.1999 | 1999 | |
| Campylobacter upsaliensis: waiting in the wings. | Bourke B, Chan VL, Sherman P. | Clin Microbiol Rev | 10.1128/cmr.11.3.440 | 1998 | ||
| Enzymology | Evaluation of Various Campylobacter-Specific Quantitative PCR (qPCR) Assays for Detection and Enumeration of Campylobacteraceae in Irrigation Water and Wastewater via a Miniaturized Most-Probable-Number-qPCR Assay. | Banting GS, Braithwaite S, Scott C, Kim J, Jeon B, Ashbolt N, Ruecker N, Tymensen L, Charest J, Pintar K, Checkley S, Neumann NF. | Appl Environ Microbiol | 10.1128/aem.00077-16 | 2016 | |
| Campylobacter jejuni cocultured with epithelial cells reduces surface capsular polysaccharide expression. | Corcionivoschi N, Clyne M, Lyons A, Elmi A, Gundogdu O, Wren BW, Dorrell N, Karlyshev AV, Bourke B. | Infect Immun | 10.1128/iai.01239-08 | 2009 | ||
| Enzymology | Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non-human primate zoological collection. | Clayton JB, Danzeisen JL, Johnson TJ, Trent AM, Hayer SS, Murphy T, Wuenschmann A, Elder M, Shen Z, Mannion A, Bryant E, Knights D, Fox JG. | J Med Primatol | 10.1111/jmp.12393 | 2019 | |
| Diversity of Gut Bacteria of Field-Collected Aedes aegypti Larvae and Females, Resistant to Temephos and Deltamethrin. | Viafara-Campo JD, Vivero-Gomez RJ, Fernando-Largo D, Manjarres LM, Moreno-Herrera CX, Cadavid-Restrepo G. | Insects | 10.3390/insects16020181 | 2025 | ||
| Prevalence of Thermotolerant Campylobacter spp. in Chicken Meat in Croatia and Multilocus Sequence Typing of a Small Subset of Campylobacter jejuni and Campylobacter coli Isolates. | Mikulic M, Humski A, Njari B, Ostovic M, Duvnjak S, Cvetnic Z. | Food Technol Biotechnol | 10.17113/ftb.54.04.16.4647 | 2016 | ||
| Enzymology | Detection of Campylobacter spp. in chicken fecal samples by real-time PCR. | Lund M, Nordentoft S, Pedersen K, Madsen M. | J Clin Microbiol | 10.1128/jcm.42.11.5125-5132.2004 | 2004 | |
| Enzymology | Healthy puppies and kittens as carriers of Campylobacter spp., with special reference to Campylobacter upsaliensis. | Hald B, Madsen M. | J Clin Microbiol | 10.1128/jcm.35.12.3351-3352.1997 | 1997 | |
| Enzymology | Detection of Campylobacter species and Arcobacter butzleri in stool samples by use of real-time multiplex PCR. | de Boer RF, Ott A, Guren P, van Zanten E, van Belkum A, Kooistra-Smid AM. | J Clin Microbiol | 10.1128/jcm.01716-12 | 2013 | |
| Phylogeny | Rapid identification and quantification of Campylobacter coli and Campylobacter jejuni by real-time PCR in pure cultures and in complex samples. | Leblanc-Maridor M, Beaudeau F, Seegers H, Denis M, Belloc C. | BMC Microbiol | 10.1186/1471-2180-11-113 | 2011 | |
| Enzymology | Characterization and description of "Campylobacter upsaliensis" isolated from human feces. | Goossens H, Pot B, Vlaes L, Van den Borre C, Van den Abbeele R, Van Naelten C, Levy J, Cogniau H, Marbehant P, Verhoef J. | J Clin Microbiol | 10.1128/jcm.28.5.1039-1046.1990 | 1990 | |
| Phylogeny | Development of a real-time fluorescence resonance energy transfer PCR to detect arcobacter species. | Abdelbaqi K, Buissonniere A, Prouzet-Mauleon V, Gresser J, Wesley I, Megraud F, Menard A. | J Clin Microbiol | 10.1128/jcm.00256-07 | 2007 | |
| Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus. | Miller WG, On SL, Wang G, Fontanoz S, Lastovica AJ, Mandrell RE. | J Clin Microbiol | 10.1128/jcm.43.5.2315-2329.2005 | 2005 | ||
| Enzymology | Reverse transcription and polymerase chain reaction amplification of rRNA for detection of Helicobacter species. | Engstrand L, Nguyen AM, Graham DY, el-Zaatari FA. | J Clin Microbiol | 10.1128/jcm.30.9.2295-2301.1992 | 1992 | |
| Enzymology | Direct polymerase chain reaction detection of Campylobacter jejuni and Campylobacter coli in raw milk and dairy products. | Wegmuller B, Luthy J, Candrian U. | Appl Environ Microbiol | 10.1128/aem.59.7.2161-2165.1993 | 1993 | |
| Identification and characterization of an immunogenic outer membrane protein of Campylobacter jejuni. | Burnens A, Stucki U, Nicolet J, Frey J. | J Clin Microbiol | 10.1128/jcm.33.11.2826-2832.1995 | 1995 | ||
| Isolation of Campylobacter upsaliensis From an Abscessed Hepatic Mass in a Dog. | Boston TA, Lawhon SD, Aitee GF, Como K, Sannajust K, Gremillion CL, Dodson HE, Bryan LK, Russell KE. | J Vet Intern Med | 10.1111/jvim.70195 | 2025 | ||
| Multidrug resistance and high genotypic diversity in Campylobacter upsaliensis from household dogs in Metro Manila, Philippines. | Subejano MSEP, Penuliar GM. | New Microbiol | 2023 | |||
| Evaluation of a rapid fluorescence immunoassay for detecting Campylobacter antigens in stool samples. | Benejat L, Ducournau A, Gebhart J, Bessede E, Becker J, Jauvain M, Lehours P. | Gut Pathog | 10.1186/s13099-025-00686-4 | 2025 | ||
| Urban water supply risks assessment under tropical climate. | Shams S, Mubarak NM, Ismail NAB, Khan MMH, Al-Mamun A, Ahsan A. | Sci Rep | 10.1038/s41598-025-88922-4 | 2025 | ||
| Genetics | Genetic characteristics and potential pathogenic agents in Campylobacter upsaliensis based on genomic analysis. | Wang H, Gu Y, Ju C, Li Y, Chen X, Zhou G, Zhang X, Liu C, Chen J, Han Y, Zhang J, Shao Z, Zhang M. | Emerg Microbes Infect | 10.1080/22221751.2023.2294857 | 2024 | |
| Towards an inclusive conference experience: evaluation of the Education and Outreach Symposium at the Microbiology Society Annual Conference 2024. | Lacey MM, Dillon MJ, Goodman S, Easton V, Graham AI. | Access Microbiol | 10.1099/acmi.0.000947.v3 | 2025 | ||
| Clinical performance evaluation of TAQPATH Enteric Bacterial Select Panel for the detection of common enteric bacterial pathogens in comparison to routine stool culture and other qPCR-based diagnostic tests. | Koeffer J, Kolb M, Sorel O, Ulekleiv C, Feenstra JDM, Eigner U. | Microbiol Spectr | 10.1128/spectrum.03172-23 | 2024 | ||
| Performance of four commercial real-time PCR assays for the detection of bacterial enteric pathogens in clinical samples. | Berenger BM, Chui L, Ferrato C, Lloyd T, Li V, Pillai DR. | Int J Infect Dis | 10.1016/j.ijid.2021.10.035 | 2022 | ||
| Concomitant Campylobacteriosis in a Puppy and in Its Caregiver: A One Health Perspective Paradigm in Human-Pet Relationship. | Candellone A, Badino P, Girolami F, Cerquetella M, Nebbia P, Aresu L, Zoppi S, Bergero D, Odore R. | Vet Sci | 10.3390/vetsci10040244 | 2023 | ||
| Enzymology | Campylobacter upsaliensis isolated from a giant hepatic cyst. | Ohkoshi Y, Sato T, Murabayashi H, Sakai K, Takakuwa Y, Fukushima Y, Nakajima C, Suzuki Y, Yokota SI. | J Infect Chemother | 10.1016/j.jiac.2020.02.015 | 2020 | |
| Comparative Evaluation of Tongue and Periodontal Pocket Microbiome in Relation to Helicobacter pylori Gastric Disease: 16S rRNA Gene Sequencing Analysis | Zamparini F, Buonavoglia A, Pellegrini F, Diakoudi G, Pavoni M, Fiorini G, Sambri V, Spinelli A, Vaira D, Gandolfi M, Prati C. | Antibiotics (Basel) | 2025 | |||
| Genetics | Identification of Novel Gene-Specific Markers for Differentiating Various Pathogenic Campylobacter Species Using a Pangenome Analysis Approach. | Kuufire E, Bentum KE, Nyarku R, Osei V, Elrefaey A, James T, Woube Y, Folitse R, Samuel T, Abebe W. | Pathogens | 10.3390/pathogens14050477 | 2025 | |
| Enzymology | Exploring the role of healthy dogs as hosts of enterohepatic Helicobacter species using cultivation-dependent and -independent approaches. | Ochoa S, Ojeda J, Martinez OA, Vidal-Veuthey B, Collado L. | Zoonoses Public Health | 10.1111/zph.12817 | 2021 | |
| Computational modeling approach to identify potential anti-Campylobacter peptides from Zingiber officinale targeting efflux pump and lipooligosaccharide. | Alhumaidi MS. | Open Vet J | 10.5455/ovj.2025.v15.i6.18 | 2025 | ||
| Genetics | Pathogen Detection and Resistome Analysis in Healthy Shelter Dogs Using Whole Metagenome Sequencing. | Shringi S, Shah DH, Carney K, Verma A. | Pathogens | 10.3390/pathogens14010033 | 2025 | |
| Genetics | Genome Analysis of the Multidrug-Resistant Campylobacter coli BCT3 of the Sequence Type (ST) 872 Isolated from a Pediatric Diarrhea Case. | Papadimitriou K, Ioannidis A, Slavko A, Chronopoulou G, Marmaras N, Pangalis A, Olntasi E, Vassilaki N, Koufogeorgou EI, Kolida I, Theodoridis D, Chatzipanagiotou S. | Microorganisms | 10.3390/microorganisms13061420 | 2025 | |
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| Ebola or Not? Evaluating the Ill Traveler From Ebola-Affected Countries in West Africa. | Fairley JK, Kozarsky PE, Kraft CS, Guarner J, Steinberg JP, Anderson E, Jacob JT, Meloy P, Gillespie D, Espinoza TR, Isakov A, Vanairsdale S, Baker E, Wu HM. | Open Forum Infect Dis | 10.1093/ofid/ofw005 | 2016 | ||
| Distinct genotypes of human and canine isolates of Campylobacter upsaliensis determined by 16S rRNA gene typing and plasmid profiling. | Stanley J, Jones C, Burnens A, Owen RJ. | J Clin Microbiol | 10.1128/jcm.32.7.1788-1794.1994 | 1994 | ||
| The interplay between Campylobacter and Helicobacter species and other gastrointestinal microbiota of commercial broiler chickens. | Kaakoush NO, Sodhi N, Chenu JW, Cox JM, Riordan SM, Mitchell HM. | Gut Pathog | 10.1186/1757-4749-6-18 | 2014 | ||
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| Emergence of Genetic Diversity and Multi-Drug Resistant Campylobacter jejuni From Wild Birds in Beijing, China. | Du J, Luo J, Huang J, Wang C, Li M, Wang B, Wang B, Chang H, Ji J, Sen K, He H. | Front Microbiol | 10.3389/fmicb.2019.02433 | 2019 | ||
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| Isoprenoid quinones of Campylobacter cryaerophila, C. cinaedi, C. fennelliae, C. hyointestinalis, C. pylori, and "C. upsaliensis". | Moss CW, Lambert-Fair MA, Nicholson MA, Guerrant GO. | J Clin Microbiol | 10.1128/jcm.28.2.395-397.1990 | 1990 | ||
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| Fic Proteins of Campylobacter fetus subsp. venerealis Form a Network of Functional Toxin-Antitoxin Systems. | Sprenger H, Kienesberger S, Pertschy B, Poltl L, Konrad B, Bhutada P, Vorkapic D, Atzmuller D, Feist F, Hogenauer C, Gorkiewicz G, Zechner EL. | Front Microbiol | 10.3389/fmicb.2017.01965 | 2017 | ||
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| Metabolism | Modification of the Campylobacter jejuni flagellin glycan by the product of the Cj1295 homopolymeric-tract-containing gene. | Hitchen P, Brzostek J, Panico M, Butler JA, Morris HR, Dell A, Linton D. | Microbiology (Reading) | 10.1099/mic.0.038091-0 | 2010 | |
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| Enzymology | A comprehensive evaluation of colonic mucosal isolates of Sutterella wadsworthensis from inflammatory bowel disease. | Mukhopadhya I, Hansen R, Nicholl CE, Alhaidan YA, Thomson JM, Berry SH, Pattinson C, Stead DA, Russell RK, El-Omar EM, Hold GL. | PLoS One | 10.1371/journal.pone.0027076 | 2011 | |
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| Enzymology | Enteric campylobacteria and RNA viruses associated with healthy and diarrheic humans in the Chinook health region of southwestern Alberta, Canada. | Inglis GD, Boras VF, Houde A. | J Clin Microbiol | 10.1128/jcm.01220-10 | 2011 | |
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| Genetics | The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. | Miller WG, Parker CT, Rubenfield M, Mendz GL, Wosten MM, Ussery DW, Stolz JF, Binnewies TT, Hallin PF, Wang G, Malek JA, Rogosin A, Stanker LH, Mandrell RE. | PLoS One | 10.1371/journal.pone.0001358 | 2007 | |
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| Phylogeny | Campylobacter troglodytis sp. nov., isolated from feces of human-habituated wild chimpanzees (Pan troglodytes schweinfurthii) in Tanzania. | Kaur T, Singh J, Huffman MA, Petrzelkova KJ, Taylor NS, Xu S, Dewhirst FE, Paster BJ, Debruyne L, Vandamme P, Fox JG. | Appl Environ Microbiol | 10.1128/aem.01840-09 | 2011 |
| #2005 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5365 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38135 | ; Curators of the CIP; |
| #46171 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14913 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #68373 | Automatically annotated from API CAM . |
| #68380 | Automatically annotated from API rID32A . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123733 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103681 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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