Sphaerochaeta coccoides SPN1 | Type strain | DSM 17374, ATCC BAA-1237 | BacDiveID:14350

Strain identifier

BacDive ID: 14350

Type strain:

Species: Sphaerochaeta coccoides

Strain Designation: SPN1

Culture col. no.: DSM 17374, ATCC BAA-1237

Strain history: <- S. Dröge, Johannes Gutenberg-Universität Mainz, Germany; SPN1 <- S. Dröge

NCBI tax ID(s): 760011 (strain), 273376 (species)

SI-ID 297328

DSM 17374, ATCC BAA-1237

Section

Sphaerochaeta coccoides SPN1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from hindgut of the termite Neotermes castaneus.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Sphaerochaetaceae*
	Genus	*Sphaerochaeta*
	Species	**Sphaerochaeta coccoides**
	Full Scientific Name (LPSN)	Sphaerochaeta coccoides (Dröge et al. 2006) Abt et al. 2012

	Synonym	Parasphaerochaeta coccoides
	Synonym	Spirochaeta coccoides

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.807

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

SPHAEROCHAETA MEDIUM (DSMZ Medium 1204)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6842]			growth	30 °C

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6842]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.651

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6842]	Sample type/isolated from	hindgut of the termite Neotermes castaneus
[Ref.: #6842]	Host species	Neotermes castaneus
[Ref.: #6842]	Country	Cuba
[Ref.: #6842]	Country ISO 3 Code	CUB
[Ref.: #6842]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Global distribution of 16S sequence AJ698092 (>99% sequence identity) for Sphaerochaeta coccoides subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	33
Animal Samples	84
Plant Samples	16
Total Samples	174

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6842]	Spirochaeta sp. SPN1 partial 16S rRNA gene, type strain SPN1T	AJ698092	1500	ENA	760011 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parasphaerochaeta coccoides DSM 17374	GCA_000208385	complete	GenBank	760011 tax ID	*
[Ref.: #66792]	Sphaerochaeta coccoides DSM 17374	760011.3	complete	PATRIC	760011 tax ID	*
[Ref.: #66792]	Sphaerochaeta coccoides SPN1, DSM 17374	2503904012	complete	JGI IMG/M	760011 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphaerochaeta coccoides DSM 17374 DSM 17374 NCBI: GCA_000208385.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerochaeta coccoides DSM 17374 DSM 17374 NCBI: GCA_000208385.1
[Ref.: #69480]	motile	no	86.011	no
[Ref.: #69480]	flagellated	no	97.935	no
[Ref.: #69480]	gram-positive	no	90.533	no
[Ref.: #69480]	anaerobic	yes	97.929	yes
[Ref.: #69480]	aerobic	no	98.63	yes
[Ref.: #69480]	halophile	no	75.061	no
[Ref.: #69480]	spore-forming	no	94.807	no
[Ref.: #69480]	glucose-util	yes	89.563	no
[Ref.: #69480]	thermophile	no	86.547	no
[Ref.: #69480]	glucose-ferment	yes	70.63	no

Availability in culture collections External links

Culture collection no.

DSM 17374, ATCC BAA-1237

SI-ID 297328

*

References

#6842

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17374

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83493

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297328.1 )

* These data were automatically processed and therefore are not curated

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