Strain identifier

BacDive ID: 14350

Type strain: Yes

Species: Sphaerochaeta coccoides

Strain Designation: SPN1

Culture col. no.: DSM 17374, ATCC BAA 1237

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General

@ref: 6842

BacDive-ID: 14350

DSM-Number: 17374

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, mesophilic

description: Sphaerochaeta coccoides SPN1 is an anaerobe, mesophilic bacterium that was isolated from hindgut of the termite Neotermes castaneus.

strain history: <- S. Dröge, Johannes Gutenberg-Universität Mainz, Germany; SPN1 <- S. Dröge

doi: 10.13145/bacdive14350.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetes
  • domain: Bacteria
  • phylum: Spirochaetes
  • class: Spirochaetes
  • order: Spirochaetales
  • family: Sphaerochaetaceae
  • genus: Sphaerochaeta
  • species: Sphaerochaeta coccoides
  • full scientific name: Sphaerochaeta coccoides (Dröge et al. 2006) Abt et al. 2012
  • synonyms

    @refsynonym
    20215Parasphaerochaeta coccoides
    20215Spirochaeta coccoides

@ref: 6842

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetes

order: Spirochaetales

family: Spirochaetaceae

genus: Sphaerochaeta

species: Sphaerochaeta coccoides

full scientific name: Sphaerochaeta coccoides (Dröge et al. 2006) Abt et al. 2012

strain designation: SPN1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6842
  • name: SPHAEROCHAETA MEDIUM (DSMZ Medium 1204), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1204.pdf

culture temp

  • @ref: 6842
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 6842
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 6842
  • sample type: hindgut of the termite Neotermes castaneus
  • host species: Neotermes castaneus
  • country: Cuba
  • origin.country: CUB
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

Safety information

risk assessment

  • @ref: 6842
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6842
  • description: Spirochaeta sp. SPN1 partial 16S rRNA gene, type strain SPN1T
  • accession: AJ698092
  • length: 1500
  • database: ena
  • NCBI tax ID: 760011

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphaerochaeta coccoides DSM 17374GCA_000208385completencbi760011
66792Sphaerochaeta coccoides DSM 17374760011.3completepatric760011
66792Sphaerochaeta coccoides SPN1, DSM 173742503904012completeimg760011

External links

@ref: 6842

culture collection no.: DSM 17374, ATCC BAA 1237

straininfo link

@refpassport
20218http://www.straininfo.net/strains/690449
20218http://www.straininfo.net/strains/690450

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6842Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17374)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17374
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)