Campylobacter coli (CCUG 12073, LMG 9854)

Name: Campylobacter coli (CCUG 12073, LMG 9854)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 142368

Type strain

Culture col. no. CCUG 12073 LMG 9854

NCBI tax ID(s) 887302 195

Special Collections CCUG

Links

Campylobacter coli CCUG 12073 is a prokaryote that was isolated from Human.

genome sequence

Name and taxonomic classification

SI-ID 1371

LMG 9854,CCUG 12073

@ref 20215

Last LPSN update 2025-12-16 10:04:05

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter coli

Full scientific name Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)

Synonyms (2)

Campylobacter hyoilei
"Vibrio coli"

BacDive ID	Other strains from **Campylobacter coli** (103)	Type strain
2103	C. coli Brussels, 1407, DSM 4689, ATCC 33559, CCM ... (type strain)
130905	C. coli CCS 24907/13784, CCS 249 07/13784, DSM 102057
130904	C. coli CCS 1377, DSM 102056
130903	C. coli CCS17341/20, CCS 17341/20, DSM 101855
130902	C. coli BA1341, CNET020, DSM 24132
130901	C. coli 3051, CNET071, DSM 24199
130900	C. coli 3301, CNET072, DSM 24206
130899	C. coli 3118, CNET070, DSM 24226
130898	C. coli CNET068, R381, DSM 24190
130897	C. coli CNET069, CPR1, DSM 24218
130896	C. coli BA1311, CNET019, DSM 24128
130895	C. coli C2400, CNET062, DSM 24160
130894	C. coli CNET082, OK1A, DSM 24210
130892	C. coli CNET063, CS46T, DSM 24305
130891	C. coli 13, CNET051, DSM 24155
130890	C. coli BA1391, CNET021, DSM 24156
130889	C. coli CNET067, Hd3311, DSM 24309
130888	C. coli 4039, CNET056, DSM 24266
130887	C. coli CNET066, Hz1491, DSM 24181
130886	C. coli 5179, CNET064, DSM 24170
130239	C. coli BFR-CA-9557, DSM 100395
135673	C. coli P6, CIP 70.79
135779	C. coli P875, CIP 71.5
137528	C. coli P2, CIP 70.77
137529	C. coli P3, CIP 70.78
137666	C. coli CIP 104367, CCUG 33450
138468	C. coli P9, CIP 70.81
138490	C. coli LRA 069 05 89, CIP 103753, ATCC 49941
139429	C. coli CIP 110282, CCM 7227, ATCC 43478, LMG 21266, ...
141940	C. coli CCUG 8506
142108	C. coli CCUG 10939
142119	C. coli CCUG 10951, ATCC 43474
142123	C. coli CCUG 10955
142124	C. coli CCUG 10956
142125	C. coli CCUG 10957
142127	C. coli CCUG 10959
142128	C. coli CCUG 10960, ATCC 43479
142132	C. coli CCUG 10964
142136	C. coli CCUG 10969
142367	C. coli CCUG 12068, CCUG 21872, NCTC 12110, LMG 9853
142372	C. coli CCUG 12079, LMG 9855
142373	C. coli CCUG 12080, LMG 9856
142524	C. coli CCUG 12791
142526	C. coli CCUG 12794
142764	C. coli CCUG 14537, ATCC 43488
142808	C. coli CCUG 15025
142810	C. coli CCUG 15029
142819	C. coli CCUG 15046, NCTC 12143
142820	C. coli CCUG 15051
142821	C. coli CCUG 15052
142822	C. coli CCUG 15055
142855	C. coli CCUG 15360
143197	C. coli CCUG 17715
143207	C. coli CCUG 17754, ATCC 43484, CCUG 12788
143479	C. coli CCUG 19511
143481	C. coli CCUG 19513
143482	C. coli CCUG 19514
143490	C. coli CCUG 19524
143491	C. coli CCUG 19525
143493	C. coli CCUG 19527
143612	C. coli CCUG 20578
143615	C. coli CCUG 20583
143618	C. coli CCUG 20588
143619	C. coli CCUG 20591
144401	C. coli CCUG 24865 A, ATCC 49299
144601	C. coli CCUG 25897
144602	C. coli CCUG 25898
144605	C. coli CCUG 25915
145245	C. coli CCUG 27940
145470	C. coli CCUG 28632
145517	C. coli CCUG 28730
145715	C. coli CCUG 29403
145716	C. coli CCUG 29404
146180	C. coli CCUG 30530
147015	C. coli CCUG 32651
147286	C. coli CCUG 33294
147541	C. coli CCUG 33769 A, ATCC 51798
147542	C. coli CCUG 33770 A
147543	C. coli CCUG 33771 A
147544	C. coli CCUG 33772 A
148422	C. coli CCUG 35408
149172	C. coli CCUG 36991
149173	C. coli CCUG 36992
149174	C. coli CCUG 36993
149175	C. coli CCUG 36994
149176	C. coli CCUG 36995
150137	C. coli CCUG 39075
151899	C. coli CCUG 45147
153095	C. coli CCUG 48470
153656	C. coli CCUG 50506
154160	C. coli CCUG 52607
154331	C. coli CCUG 53138
174369	C. coli meC0280, DSM 101856
174370	C. coli meC0281, DSM 104626
174371	C. coli meC0467, DSM 104627
174372	C. coli CCS 24982/43, DSM 118014
174373	C. coli CCS 17343/22, DSM 118015
174374	C. coli CCS 07/803, DSM 118016
174375	C. coli CCS 265 07/14005, DSM 118022
174376	C. coli CCS 289 08/401, DSM 118025
174377	C. coli CCS 554, DSM 118028
174378	C. coli CCS 551, DSM 118029
176409	C. coli CCS 17344/23, CCS 1744/23, DSM 118019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.955
125439	negative	99

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		93.046
125439		98

Fatty acid profile

Metadata FA analysis

@ref

45645

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	39.8	17.824
C16:0	35	16
C14:0	8.4	14
C14:0 3OH/C16:1 ISO I	6.6	15.485
C16:1 ω7c	5.5	15.819
C19:0 CYCLO ω8c	2.2	18.9
C12:0 ALDE ?	1.5	10.915
C19:0 CYCLO ω9c	0.9	18.87

Metadata FA analysis

@ref

45645

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	39.8	17.824
C16:0	35	16
C14:0	8.4	14
C14:0 3OH/C16:1 ISO I	6.6	15.485
C16:1 ω7c	5.5	15.819
C19:0 CYCLO ω8c	2.2	18.9
C12:0 ALDE ?	1.5	10.915
C19:0 CYCLO ω9c	0.9	18.87

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human

Isolation

45645

Sample typeHuman

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM25399v2 assembly for Campylobacter coli LMG 9854	contig	GCA_000253995	887302.3	2516143047	887302	55.49

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter coli LMG 9854
NCBI: GCA_000253995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	no	61.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	88.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter coli LMG 9854
PATRIC: 887302.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.96	no
125438	anaerobic	anaerobicⓘ	no	80.03	no
125438	aerobic	aerobicⓘ	no	86.17	no
125438	spore-forming	spore-formingⓘ	no	93.05	no
125438	thermophilic	thermophileⓘ	no	86.68	no
125438	flagellated	motile2+ⓘ	yes	65.64	no

Literature

Title	Authors	Journal	DOI	Year
Identification of Campylobacter jejuni on the basis of a species-specific gene that encodes a membrane protein.	Stucki U, Frey J, Nicolet J, Burnens AP.	J Clin Microbiol	10.1128/jcm.33.4.855-859.1995	1995
Identification and characterization of an immunogenic outer membrane protein of Campylobacter jejuni.	Burnens A, Stucki U, Nicolet J, Frey J.	J Clin Microbiol	10.1128/jcm.33.11.2826-2832.1995	1995

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#45645	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12073
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter coli (CCUG 12073, LMG 9854)

Name and taxonomic classification