Strain identifier
BacDive ID: 142368
Type strain: 
Species: Campylobacter coli
NCBI tax ID(s): 887302 (strain), 195 (species)
version 8.1 (current version)
General
@ref: 45645
BacDive-ID: 142368
keywords: genome sequence, Bacteria
description: Campylobacter coli CCUG 12073 is a bacterium that was isolated from Human.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 887302 | strain |
| 195 | species |
doi: 10.13145/bacdive142368.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter coli
- full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
@ref synonym 20215 Vibrio coli 20215 Campylobacter hyoilei
@ref: 45645
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter coli
type strain: no
Physiology and metabolism
fatty acid profile
@ref fatty acid percentage ECL 45645 C14:0 8.4 14 45645 C16:0 35 16 45645 C12:0 ALDE ? 1.5 10.915 45645 C14:0 3OH/C16:1 ISO I 6.6 15.485 45645 C16:1 ω7c 5.5 15.819 45645 C18:1 ω7c /12t/9t 39.8 17.824 45645 C19:0 CYCLO ω8c 2.2 18.9 45645 C19:0 CYCLO ω9c 0.9 18.87 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
@ref fatty acid percentage ECL 45645 C14:0 8.4 14 45645 C16:0 35 16 45645 C12:0 ALDE ? 1.5 10.915 45645 C14:0 3OH/C16:1 ISO I 6.6 15.485 45645 C16:1 ω7c 5.5 15.819 45645 C18:1 ω7c /12t/9t 39.8 17.824 45645 C19:0 CYCLO ω8c 2.2 18.9 45645 C19:0 CYCLO ω9c 0.9 18.87 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 45645
- sample type: Human
isolation source categories
- Cat1: #Host
- Cat2: #Human
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter coli LMG 9854 | GCA_000253995 | contig | ncbi | 887302 |
| 66792 | Campylobacter coli LMG 9854 | 887302.3 | wgs | patric | 887302 |
| 66792 | Campylobacter coli LMG 9854 | 2516143047 | draft | img | 887302 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.512 | no |
| flagellated | yes | 63.11 | no |
| gram-positive | no | 98.66 | no |
| anaerobic | no | 89.068 | no |
| halophile | no | 89.222 | no |
| spore-forming | no | 95.786 | no |
| thermophile | no | 85.789 | no |
| glucose-util | no | 91.147 | no |
| aerobic | no | 93.956 | no |
| glucose-ferment | no | 88.893 | no |
External links
@ref: 45645
culture collection no.: CCUG 12073, LMG 9854
straininfo link
- @ref: 97901
- straininfo: 1371
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45645 | Curators of the CCUG | https://www.ccug.se/strain?id=12073 | Culture Collection University of Gothenburg (CCUG) (CCUG 12073) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 97901 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID1371.1 |