Campylobacter coli (DSM 24128, BA1311, CNET019)

Name: Campylobacter coli (DSM 24128, BA1311, CNET019)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130896

Type strain

Strain Designation BA1311, CNET019

Culture col. no. DSM 24128 BA1311 CNET019

NCBI tax ID(s) 195

Special Collections DSMZ

History <- F. van der Wal, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; CNET019 <- J. A. Wagenaar, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; BA1311

Links

Campylobacter coli BA1311 is a microaerophile, mesophilic prokaryote that was isolated from broiler flock outbreak.

microaerophile mesophilic genome sequence

Name and taxonomic classification

SI-ID 403056

DSM 24128

@ref 20215

Last LPSN update 2025-12-16 10:01:06

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter coli

Full scientific name Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)

Synonyms (2)

Campylobacter hyoilei
"Vibrio coli"

BacDive ID	Other strains from **Campylobacter coli** (103)	Type strain
2103	C. coli Brussels, 1407, DSM 4689, ATCC 33559, CCM ... (type strain)
130905	C. coli CCS 24907/13784, CCS 249 07/13784, DSM 102057
130904	C. coli CCS 1377, DSM 102056
130903	C. coli CCS17341/20, CCS 17341/20, DSM 101855
130902	C. coli BA1341, CNET020, DSM 24132
130901	C. coli 3051, CNET071, DSM 24199
130900	C. coli 3301, CNET072, DSM 24206
130899	C. coli 3118, CNET070, DSM 24226
130898	C. coli CNET068, R381, DSM 24190
130897	C. coli CNET069, CPR1, DSM 24218
130895	C. coli C2400, CNET062, DSM 24160
130894	C. coli CNET082, OK1A, DSM 24210
130892	C. coli CNET063, CS46T, DSM 24305
130891	C. coli 13, CNET051, DSM 24155
130890	C. coli BA1391, CNET021, DSM 24156
130889	C. coli CNET067, Hd3311, DSM 24309
130888	C. coli 4039, CNET056, DSM 24266
130887	C. coli CNET066, Hz1491, DSM 24181
130886	C. coli 5179, CNET064, DSM 24170
130239	C. coli BFR-CA-9557, DSM 100395
135673	C. coli P6, CIP 70.79
135779	C. coli P875, CIP 71.5
137528	C. coli P2, CIP 70.77
137529	C. coli P3, CIP 70.78
137666	C. coli CIP 104367, CCUG 33450
138468	C. coli P9, CIP 70.81
138490	C. coli LRA 069 05 89, CIP 103753, ATCC 49941
139429	C. coli CIP 110282, CCM 7227, ATCC 43478, LMG 21266, ...
141940	C. coli CCUG 8506
142108	C. coli CCUG 10939
142119	C. coli CCUG 10951, ATCC 43474
142123	C. coli CCUG 10955
142124	C. coli CCUG 10956
142125	C. coli CCUG 10957
142127	C. coli CCUG 10959
142128	C. coli CCUG 10960, ATCC 43479
142132	C. coli CCUG 10964
142136	C. coli CCUG 10969
142367	C. coli CCUG 12068, CCUG 21872, NCTC 12110, LMG 9853
142368	C. coli CCUG 12073, LMG 9854
142372	C. coli CCUG 12079, LMG 9855
142373	C. coli CCUG 12080, LMG 9856
142524	C. coli CCUG 12791
142526	C. coli CCUG 12794
142764	C. coli CCUG 14537, ATCC 43488
142808	C. coli CCUG 15025
142810	C. coli CCUG 15029
142819	C. coli CCUG 15046, NCTC 12143
142820	C. coli CCUG 15051
142821	C. coli CCUG 15052
142822	C. coli CCUG 15055
142855	C. coli CCUG 15360
143197	C. coli CCUG 17715
143207	C. coli CCUG 17754, ATCC 43484, CCUG 12788
143479	C. coli CCUG 19511
143481	C. coli CCUG 19513
143482	C. coli CCUG 19514
143490	C. coli CCUG 19524
143491	C. coli CCUG 19525
143493	C. coli CCUG 19527
143612	C. coli CCUG 20578
143615	C. coli CCUG 20583
143618	C. coli CCUG 20588
143619	C. coli CCUG 20591
144401	C. coli CCUG 24865 A, ATCC 49299
144601	C. coli CCUG 25897
144602	C. coli CCUG 25898
144605	C. coli CCUG 25915
145245	C. coli CCUG 27940
145470	C. coli CCUG 28632
145517	C. coli CCUG 28730
145715	C. coli CCUG 29403
145716	C. coli CCUG 29404
146180	C. coli CCUG 30530
147015	C. coli CCUG 32651
147286	C. coli CCUG 33294
147541	C. coli CCUG 33769 A, ATCC 51798
147542	C. coli CCUG 33770 A
147543	C. coli CCUG 33771 A
147544	C. coli CCUG 33772 A
148422	C. coli CCUG 35408
149172	C. coli CCUG 36991
149173	C. coli CCUG 36992
149174	C. coli CCUG 36993
149175	C. coli CCUG 36994
149176	C. coli CCUG 36995
150137	C. coli CCUG 39075
151899	C. coli CCUG 45147
153095	C. coli CCUG 48470
153656	C. coli CCUG 50506
154160	C. coli CCUG 52607
154331	C. coli CCUG 53138
174369	C. coli meC0280, DSM 101856
174370	C. coli meC0281, DSM 104626
174371	C. coli meC0467, DSM 104627
174372	C. coli CCS 24982/43, DSM 118014
174373	C. coli CCS 17343/22, DSM 118015
174374	C. coli CCS 07/803, DSM 118016
174375	C. coli CCS 265 07/14005, DSM 118022
174376	C. coli CCS 289 08/401, DSM 118025
174377	C. coli CCS 554, DSM 118028
174378	C. coli CCS 551, DSM 118029
176409	C. coli CCS 17344/23, CCS 1744/23, DSM 118019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.955
125439	negative	99.7

Colony morphology

22816

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22816	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22816	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

22816

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125438		93.046
125439		98.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	30089 ChEBI	acetate	-	assimilation	from API CAM
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68373	17632 ChEBI	nitrate	+	reduction	from API CAM
68373	30031 ChEBI	succinate	+	assimilation	from API CAM
68373	78019 ChEBI	triphenyltetrazolium chloride	+	reduction	from API CAM
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
68373	474053	cefazolin	224 µg		from API CAM
68373	48923	erythromycin		14 µg	from API CAM
68373	100147	nalidixic acid		84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM

Enzymes

@ref	Value	Activity	Ec
68373	catalase	+	1.11.1.6	from API CAM
68373	esterase	+		from API CAM
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68373	urease	-	3.5.1.5	from API CAM

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
22816	-	+	+	-	-	+	-	-	-	+/-	-	-	+	-	+	-	+/-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Livestock (Husbandry)
#Infection	#Disease	-
#Host	#Birds	#Chicken

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
22816	broiler flock outbreak	Netherlands	NLD	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22816	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	Campylobacter coli strain FDAARGOS_1465	complete		195.3599	195	98.64
66792	Campylobacter coli strain FDAARGOS_1465	complete		195.3691	195	98.64
66792	Campylobacter coli strain FDAARGOS_1465	complete		195.3558	195	98.64
124043	ASM1993098v1 assembly for Campylobacter coli FDAARGOS_1465	complete	GCA_019930985	195.3529	195	98.06

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter coli strain FDAARGOS_1465
PATRIC: 195.3529

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	no	62.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	78.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter coli strain FDAARGOS_1465 strain Not applicable
PATRIC: 195.3529

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.96	no
125438	anaerobic	anaerobicⓘ	no	80.00	yes
125438	spore-forming	spore-formingⓘ	no	93.05	no
125438	thermophilic	thermophileⓘ	no	86.66	yes
125438	aerobic	aerobicⓘ	no	90.49	yes
125438	flagellated	motile2+ⓘ	yes	65.88	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22816	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24128
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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