Sphingobium yanoikuyae (DSM 7235, IAM 14225, LMG 3925)

Name: Sphingobium yanoikuyae (DSM 7235, IAM 14225, LMG 3925)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14179

Type strain

Strain Designation Pn45

Culture col. no. DSM 7235 IAM 14225 LMG 3925 NCTC 10590 Pn45 4 more

NCBI tax ID(s) 13690

Special Collections DSMZ JCM KCTC

History DSMZ <- LMG <- NCTC <- K. Bettelheim (Chromobacterium folium) JCM <-- IFO 15163 <-- NCTC 10590 <-- K. A. Bettelheim <-- J. F. Gordon Pn 4S.

Links

Sphingobium yanoikuyae Pn45 is a bacterium that was isolated from Psychotria nairobiensis.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 265310

LMG 3925,IAM 14225,IFO 15163,NCTC 10590,DSM 7235,JCM 10196,KCTC 2819,NBRC 15163

@ref 20215

Last LPSN update 2026-05-29 08:28:13

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingobium

Species Sphingobium yanoikuyae

Full scientific name Sphingobium yanoikuyae (Yabuuchi et al. 1990) Takeuchi et al. 2001

Synonyms (1)

Sphingomonas yanoikuyae

BacDive ID	Other strains from **Sphingobium yanoikuyae** (13)	Type strain
14180	S. yanoikuyae AB 1105, DSM 7462, ATCC 51230, GIFU 9882, ... (type strain)
14177	S. yanoikuyae B1, DSM 6900, JCM 30198
14178	S. yanoikuyae Ac3S, DSM 7224, LMG 3926, NCTC 10591, USCC ...
14204	S. yanoikuyae SS3, DSM 6432
142700	S. yanoikuyae CCUG 14204, LMG 11066
142741	S. yanoikuyae CCUG 14335, LMG 9552
142742	S. yanoikuyae CCUG 14336 A, LMG 9553
152764	S. yanoikuyae CCUG 47565
154683	S. yanoikuyae CCUG 54832
156234	S. yanoikuyae CCUG 60819 Q
156569	S. yanoikuyae CCUG 62751 Q
156912	S. yanoikuyae CCUG 66940
158033	S. yanoikuyae XLDN2-5, DSM 28039

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3070	NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3070	positive	growth	28
67770	positive	growth	30

Physiology and metabolism

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)

Isolation

@ref	Sample type	Host species
3070	Psychotria nairobiensis	Psychotria nairobiensis

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
3070	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Chromobacterium lividum (Sphingomonas yanoikuae) 16S rRNA gene	D13946	1372		13690
124043	Sphingobium yanoikuyae gene for 16S rRNA, partial sequence, strain: NBRC 15163.	AB680786	1412		13690

GC content

@ref	GC-content (mol%)	Method
67770	64	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

References

#3070	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7235
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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