Name: Sphingobium yanoikuyae Ac3S
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14178

Type strain:

Species: Sphingobium yanoikuyae

Strain Designation: Ac3S

Culture col. no.: DSM 7224, LMG 3926, NCTC 10591, USCC 3277, JCM 10197, IFO 15164, KCTC 2820, NBRC 15164, JCM 21084, IAM 14226

Strain history: IFO 15164 <-- NCTC 10591 <-- K. A. Bettelheim <-- J. F. Gordon Ac 3S.

NCBI tax ID(s): 13690 (species)

SI-ID 6593

LMG 3926, DSM 7224, IFO 15164, NCTC 10591, JCM 10197, KCTC 2820, NBRC 15164, IAM 14226, JCM 21084

Special Collections

Other strains from Sphingobium yanoikuyae

Section

When using BacDive for research please cite our paper

Sphingobium yanoikuyae Ac3S is a mesophilic bacterium that was isolated from Ardisia crispa.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium yanoikuyae**
	Full Scientific Name (LPSN)	Sphingobium yanoikuyae (Yabuuchi et al. 1990) Takeuchi et al. 2001

Synonym

Sphingomonas yanoikuyae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3059]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #3059]

Culture medium growth

[Ref.: #3059]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3059]

Culture medium composition

expand / minimize

[Ref.: #3059]

Culture medium

NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)

[Ref.: #3059]

Culture medium growth

[Ref.: #3059]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3059]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3059]			growth	28 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3059]	Sample type/isolated from	Ardisia crispa
[Ref.: #3059]	Host species	Ardisia crispa

[Ref.: #67770]	Sample type/isolated from	Ardisia crispa
[Ref.: #67770]	Host species	Ardisia crispa
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC506140 (>99% sequence identity) for Sphingobium yanoikuyae from Microbeatlas

Aquatic Samples	35267
Soil Samples	32411
Animal Samples	53023
Plant Samples	9620
Total Samples	130321

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3059]	Pathogenicity (human)	yes, in single cases
[Ref.: #3059]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobium yanoikuyae JCM 10197 gene for 16S ribosomal RNA, partial sequence	LC506140	1409	GenBank ENA	13690 tax ID
[Ref.: #124043]	Sphingobium yanoikuyae gene for 16S rRNA, partial sequence, strain: NBRC 15164.	AB680787	1412	GenBank ENA	13690 tax ID	*

[Ref.: #67770]

GC-content

64.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #3059]

Culture collection no.

DSM 7224, LMG 3926, NCTC 10591, USCC 3277, JCM 10197, IFO 15164, KCTC 2820, NBRC 15164, JCM 21084, IAM 14226

[Ref.: #83341]

SI-ID 6593

References

#3059

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7224

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83341

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6593.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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