Sphingobium yanoikuyae (DSM 7462, AB 1105, ATCC 51230)

Name: Sphingobium yanoikuyae (DSM 7462, AB 1105, ATCC 51230)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14180

Type strain

Strain Designation AB 1105

Culture col. no. DSM 7462 AB 1105 ATCC 51230 GIFU 9882 IAM 14269 11 more

NCBI tax ID(s) 883163 13690

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- JCM <- GIFU <- Bruun JCM <-- GIFU 9882 <-- Y. Bruun AB 1105. CIP <- 2000, CCM <- GIFU <- Y. Bruun

Links

Sphingobium yanoikuyae AB 1105 is a Gram-negative, motile, rod-shaped bacterium that was isolated from clinical specimen.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4988

LMG 11252,ATCC 51230,CCUG 28380,CCUG 31205,DSM 7462,IFO 15102,JCM 7371,IAM 14269,CCM 4600,KCTC 2818,CIP 106726,NBRC 15102,HAMBI 1842,NCIMB 13746

@ref 20215

Last LPSN update 2026-05-29 08:28:13

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingobium

Species Sphingobium yanoikuyae

Full scientific name Sphingobium yanoikuyae (Yabuuchi et al. 1990) Takeuchi et al. 2001

Synonyms (1)

Sphingomonas yanoikuyae

BacDive ID	Other strains from **Sphingobium yanoikuyae** (13)	Type strain
14177	S. yanoikuyae B1, DSM 6900, JCM 30198
14178	S. yanoikuyae Ac3S, DSM 7224, LMG 3926, NCTC 10591, USCC ...
14179	S. yanoikuyae Pn45, DSM 7235, IAM 14225, LMG 3925, NCTC ...
14204	S. yanoikuyae SS3, DSM 6432
142700	S. yanoikuyae CCUG 14204, LMG 11066
142741	S. yanoikuyae CCUG 14335, LMG 9552
142742	S. yanoikuyae CCUG 14336 A, LMG 9553
152764	S. yanoikuyae CCUG 47565
154683	S. yanoikuyae CCUG 54832
156234	S. yanoikuyae CCUG 60819 Q
156569	S. yanoikuyae CCUG 62751 Q
156912	S. yanoikuyae CCUG 66940
158033	S. yanoikuyae XLDN2-5, DSM 28039

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		93.612
125438	negative		92.313
124011	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3167	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
37286	MEDIUM 309 - for Flexibacter japonensis		Distilled water make up to (1000.000 ml);Sodium chloride (5.000 g);Agar(15.000 g);Peptone (5.000 g);Beef extract (3.000 g)
124011	CIP Medium 35	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3167	positive	growth	28
37286	positive	growth	37
67770	positive	growth	37
124011	positive	growth	25-37
124011	negative	growth	5
124011	negative	growth	10
124011	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	94.644

Spore formation

@ref	Spore formation	Confidence
125439		98.297

Halophily

@ref	Salt	Growth	Tested relation	Concentration
124011	NaCl	positive	growth	0 %
124011	NaCl		growth	2 %
124011	NaCl		growth	4 %
124011	NaCl		growth	6 %
124011	NaCl		growth	8 %
124011	NaCl		growth	10 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
124011	16947 ChEBI	citrate	-	carbon source
124011	4853 ChEBI	esculin	-	hydrolysis
124011	17632 ChEBI	nitrate	-	reduction
124011	17632 ChEBI	nitrate	-	respiration
124011	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
124011	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
124011	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
124011	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
124011	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
124011	caseinase	-	3.4.21.50
124011	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
124011	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
124011	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
124011	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
124011	ornithine decarboxylase	-	4.1.1.17
124011	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
124011	tryptophan deaminase	-
124011	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
124011	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
124011	not determinedn.d.	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Specimen
#Infection	#Medical environment	#Clinic

Isolation

@ref	Sample type	Host species
3167	clinical specimen
67770	Clinical specimen
124011	Human	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence D16145 (>99% sequence identity) for Sphingobium yanoikuyae from Microbeatlas

Aquatic Samples	35267
Soil Samples	32411
Animal Samples	53023
Plant Samples	9620
Total Samples	130321

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
3167	yes, in single cases	1	Risk group (German classification) According to TRBA 466
124011		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Sphi_yano_ATCC_51230_V1 assembly for Sphingobium yanoikuyae ATCC 51230	scaffold	GCA_000315525	883163.3	2537561796	883163	69.45

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Sphingobium yanoikuyae gene for 16S rRNA, partial sequence	D16145	1447	13690
20218	Sphingomonas yanoikuyae 16S ribosomal RNA, partial sequence	D30624	156	13690
20218	Sphingobium yanoikuyae gene for 16S ribosomal RNA	D84526	1388	13690
20218	Sphingobium yanoikuyae gene for 16S rRNA, partial sequence	D13728	1415	13690
20218	Sphingobium yanoikuyae partial 16S rRNA gene	X72725	1452	13690
20218	16S rRNA [Sphingomonas yanoikuyae, LMG 11252T, Genomic, 268 nt]	S56777	268	13690
20218	Sphingobium yanoikuyae gene for 16S rRNA, partial sequence, strain: NBRC 15102	AB680769	1412	13690
124043	Sphingobium yanoikuyae partial 16S rRNA gene, strain HAMBI 1842	LT899948	1466	13690

GC content

@ref	GC-content (mol%)	Method
3167	61.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphi_yano_ATCC_51230_V1 assembly for Sphingobium yanoikuyae ATCC 51230
BV-BRC: 883163.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.64	no
125439	gram_stain	BacteriaNetⓘ	negative	93.61	no
125439	spore_formation	BacteriaNetⓘ	no	98.30	no
125439	motility	BacteriaNetⓘ	yes	58.71	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingobium yanoikuyae ATCC 51230
PATRIC: 883163.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.31	no
125438	anaerobic	anaerobicⓘ	no	94.93	no
125438	aerobic	aerobicⓘ	yes	88.30	no
125438	spore-forming	spore-formingⓘ	no	87.75	no
125438	thermophilic	thermophileⓘ	no	99.08	no
125438	flagellated	motile2+ⓘ	yes	74.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	CYP101J2, CYP101J3, and CYP101J4, 1,8-Cineole-Hydroxylating Cytochrome P450 Monooxygenases from Sphingobium yanoikuyae Strain B2.	Unterweger B, Bulach DM, Scoble J, Midgley DJ, Greenfield P, Lyras D, Johanesen P, Dumsday GJ.	Appl Environ Microbiol	10.1128/aem.02067-16	2016
Phylogeny	Characterization of vB_StuS_MMDA13, a Newly Discovered Bacteriophage Infecting the Agar-Degrading Species Sphingomonas turrisvirgatae.	Marmo P, Thaller MC, Di Lallo G, Henrici De Angelis L, Poerio N, De Santis F, Fraziano M, Migliore L, D'Andrea MM.	Viruses	10.3390/v12080894	2020
	Identification, characterization, and distribution of novel amidase gene aphA in sphingomonads conferring resistance to amphenicol antibiotics.	Qian Y, Lai L, Cheng M, Fang H, Fan D, Zylstra GJ, Huang X.	Appl Environ Microbiol	10.1128/aem.01512-24	2024
	The Impact of Anti-Inflammatory Drugs on the Prokaryotic Community Composition and Selected Bacterial Strains Based on Microcosm Experiments.	Farkas R, Mireisz T, Toumi M, Abbaszade G, Sztrada N, Toth E.	Microorganisms	10.3390/microorganisms11061447	2023
Genetics	Characterization of the diethyl phthalate-degrading bacterium Sphingobium yanoikuyae SHJ.	Wang Y, Liu H, Peng Y, Tong L, Feng L, Ma K.	Data Brief	10.1016/j.dib.2018.09.033	2018
	Complete Genome Sequence of Bisphenol A-Degrading Bacterium Sphingobium sp. Strain A3, Isolated from Contaminated Soil.	Jung JY, Kang HK, Jeong DW, Jin HM, Ryu BG, Jo BY, Chung EJ, Han SS.	Microbiol Resour Announc	10.1128/mra.01088-20	2021
Phylogeny	Isolation and characterization of a novel Sphingobium yanoikuyae strain variant that uses biohazardous saturated hydrocarbons and aromatic compounds as sole carbon sources.	Mitra M, Nguyen KM, Box TW, Gilpin JS, Hamby SR, Berry TL, Duckett EH.	F1000Res	10.12688/f1000research.25284.1	2020
	Leader peptide removal in lasso peptide biosynthesis based on penultimate isoleucine residue.	Duan Y, Niu W, Pang L, Mu DS, Du ZJ, Zhang Y, Bian X, Zhong G.	Front Microbiol	10.3389/fmicb.2023.1181125	2023
	Characterization of the Phenanthrene-Degrading Sphingobium yanoikuyae SJTF8 in Heavy Metal Co-Existing Liquid Medium and Analysis of Its Metabolic Pathway.	Yin C, Xiong W, Qiu H, Peng W, Deng Z, Lin S, Liang R.	Microorganisms	10.3390/microorganisms8060946	2020
	Draft Genome Sequence of Sphingobium yanoikuyae TJ, a Halotolerant Di-n-Butyl-Phthalate-Degrading Bacterium.	Jin D, Zhu Y, Wang X, Kong X, Liu H, Wang Y, Deng Y, Jia M.	Genome Announc	10.1128/genomea.00569-16	2016
	Bacterial synergies amplify nitrogenase activity in diverse systems.	Sher AW, Tournay RJ, Gomez-Rivas E, Doty SL.	ISME Commun	10.1093/ismeco/ycae158	2024
Phylogeny	Distinct Changes Occur in the Human Breast Milk Microbiome Between Early and Established Lactation in Breastfeeding Guatemalan Mothers.	Gonzalez E, Brereton NJB, Li C, Lopez Leyva L, Solomons NW, Agellon LB, Scott ME, Koski KG.	Front Microbiol	10.3389/fmicb.2021.557180	2021
	Unusual Post-Translational Modifications in the Biosynthesis of Lasso Peptides.	Duan Y, Niu W, Pang L, Bian X, Zhang Y, Zhong G.	Int J Mol Sci	10.3390/ijms23137231	2022
Phylogeny	Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection.	Le Luyer J, Schull Q, Auffret P, Lopez P, Crusot M, Belliard C, Basset C, Carradec Q, Poulain J, Planes S, Saulnier D.	Anim Microbiome	10.1186/s42523-021-00097-1	2021
Genetics	Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family.	Gan HM, Gan HY, Ahmad NH, Aziz NA, Hudson AO, Savka MA.	Front Cell Infect Microbiol	10.3389/fcimb.2014.00188	2014
Metabolism	Biodegradation of Bisphenol A by Sphingobium sp. YC-JY1 and the Essential Role of Cytochrome P450 Monooxygenase.	Jia Y, Eltoukhy A, Wang J, Li X, Hlaing TS, Aung MM, Nwe MT, Lamraoui I, Yan Y.	Int J Mol Sci	10.3390/ijms21103588	2020
	Metadata Analysis Approaches for Understanding and Improving the Functional Involvement of Rumen Microbial Consortium in Digestion and Metabolism of Plant Biomass.	Kameshwar AKS, Ramos LP, Qin W.	J Genomics	10.7150/jgen.32164	2019
Metabolism	Genomic and metabolic analysis of fluoranthene degradation pathway in Celeribacter indicus P73T.	Cao J, Lai Q, Yuan J, Shao Z.	Sci Rep	10.1038/srep07741	2015
	Evolutionary Genomics of an Ancient Prophage of the Order Sphingomonadales.	Viswanathan V, Narjala A, Ravichandran A, Jayaprasad S, Siddaramappa S.	Genome Biol Evol	10.1093/gbe/evx024	2017
	DNA regions responsible for maintenance of Shingobium plasmid pYAN-2.	Hayashi H, Kurusu Y.	Microbes Environ	10.1264/jsme2.me13135	2014
Metabolism	Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) - structure, diversity and evolution.	Maj A, Dziewit L, Czarnecki J, Wlodarczyk M, Baj J, Skrzypczyk G, Giersz D, Bartosik D.	PLoS One	10.1371/journal.pone.0080258	2013
	A survey of deepwater horizon (DWH) oil-degrading bacteria from the Eastern oyster biome and its surrounding environment.	Thomas JC, Wafula D, Chauhan A, Green SJ, Gragg R, Jagoe C.	Front Microbiol	10.3389/fmicb.2014.00149	2014
	Antibiotic resistance patterns of environmental bacteria from sewage water in Vellore, India: isolation, virulence analysis, and characterization	Barnwal S, Saleh A.	Front Microbiol		2025
Metabolism	Isolation and characterization of Sphingomonadaceae from fouled membranes.	de Vries HJ, Beyer F, Jarzembowska M, Lipinska J, van den Brink P, Zwijnenburg A, Timmers PHA, Stams AJM, Plugge CM.	NPJ Biofilms Microbiomes	10.1038/s41522-018-0074-1	2019
	The first characterized phage against a member of the ecologically important sphingomonads reveals high dissimilarity against all other known phages.	Nielsen TK, Carstens AB, Browne P, Lametsch R, Neve H, Kot W, Hansen LH.	Sci Rep	10.1038/s41598-017-13911-1	2017
Phylogeny	Reclassification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Beijerinckia sp. strain B1, as Sphingomonas yanoikuyae by fatty acid analysis, protein pattern analysis, DNA-DNA hybridization, and 16S ribosomal DNA sequencing.	Khan AA, Wang RF, Cao WW, Franklin W, Cerniglia CE	Int J Syst Bacteriol	10.1099/00207713-46-2-466	1996
Enzymology	Sequence and expression of an isocitrate dehydrogenase-encoding gene from a polycyclic aromatic hydrocarbon oxidizer, Sphingomonas yanoikuyae B1.	Wang Y, Lau PC	Gene	10.1016/0378-1119(95)00732-6	1996
Phylogeny	Sphingobium pinisoli sp. nov., isolated from the rhizosphere soil of a Korean native pine tree.	Lee JC, Song JS, Whang KS	Antonie Van Leeuwenhoek	10.1007/s10482-018-01215-x	2018
Phylogeny	Sphingobium fontiphilum sp. nov., isolated from a freshwater spring.	Sheu SY, Shiau YW, Wei YT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.046417-0	2012
Phylogeny	Sphingobium limneticum sp. nov. and Sphingobium boeckii sp. nov., two freshwater planktonic members of the family Sphingomonadaceae, and reclassification of Sphingomonas suberifaciens as Sphingobium suberifaciens comb. nov.	Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Sproer C, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.040105-0	2012
Phylogeny	Sphingobium cupriresistens sp. nov., a copper-resistant bacterium isolated from copper mine soil, and emended description of the genus Sphingobium.	Li L, Liu H, Shi Z, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.040865-0	2012
Phylogeny	Sphingobium scionense sp. nov., an aromatic hydrocarbon-degrading bacterium isolated from contaminated sawmill soil.	Liang Q, Lloyd-Jones G	Int J Syst Evol Microbiol	10.1099/ijs.0.008144-0	2009
Phylogeny	Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas.	Yabuuchi E, Yano I, Oyaizu H, Hashimoto Y, Ezaki T, Yamamoto H	Microbiol Immunol	10.1111/j.1348-0421.1990.tb00996.x	1990

References

#3167	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7462
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37286	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124011	Collection of Institut Pasteur ; Curators of the CIP; CIP 106726
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobium yanoikuyae (DSM 7462, AB 1105, ATCC 51230)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000315525

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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