Albibacterium bauzanense (DSM 22554, CGMCC 1.10187, CIP 110134)

Name: Albibacterium bauzanense (DSM 22554, CGMCC 1.10187, CIP 110134)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14116

Type strain

Strain Designation BZ42

Culture col. no. DSM 22554 CGMCC 1.10187 CIP 110134 BZ42

NCBI tax ID(s) 653929

Special Collections DSMZ CIP Literature strains

History CIP <- 2010, R. Margesin, Innsbruck Univ., Innsbruck, Austria: strain BZ42 DSMZ <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ42 CIP <- 2010, R. Margesin, Innsbruck Univ., Innsbruck, Austria: strain BZ42

Links

Albibacterium bauzanense BZ42 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil of an industrial site.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 371122

DSM 22554,CGMCC 1.10187,CIP 110134

@ref 20215

Last LPSN update 2026-05-29 08:28:12

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Albibacterium

Species Albibacterium bauzanense

Full scientific name Albibacterium bauzanense (Zhang et al. 2010) García-López et al. 2020

Synonyms (1)

Pedobacter bauzanensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29696	negative	1.9-2.2 µm	0.5-0.6 µm	rod-shaped
125438	negative				97.966
125439	negative				99.173
116765	negative			rod-shaped

Pigmentation

29696

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16395	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
37689	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
116765	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16395	positive	growth	25
29696	positive	growth	05-25
29696	positive	optimum	20-25
37689	positive	growth	25

Culture pH

@ref	Ability	Type	PH
29696	positive	optimum	07-08
29696	positive	growth	07-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29696	aerobe
116765	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.868
125438		90.145

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29696	NaCl	positive	growth	0-3 %
29696	NaCl	positive	optimum	0-3 %

Observation

29696

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29696	4853 ChEBI	esculin	+	hydrolysis
29696	17306 ChEBI	maltose	+	carbon source
29696	37684 ChEBI	mannose	+	carbon source
29696	506227 ChEBI	N-acetylglucosamine	+	carbon source
116765	17632 ChEBI	nitrate	-	reduction
116765	16301 ChEBI	nitrite	-	reduction
29696	17814 ChEBI	salicin	+	carbon source
29696	17992 ChEBI	sucrose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116765	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
29696	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29696	catalase	+	1.11.1.6
116765	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
29696	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116765	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
116765	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	CMP-KDO biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	quinate degradation	100	2 of 2
66794	denitrification	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	NAD metabolism	94.44	17 of 18
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	Entner Doudoroff pathway	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	lipoate biosynthesis	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	purine metabolism	67.02	63 of 94
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	lipid A biosynthesis	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	pyrimidine metabolism	64.44	29 of 45
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	metabolism of disaccharids	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	cysteine metabolism	61.11	11 of 18
66794	vitamin K metabolism	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	coenzyme M biosynthesis	60	6 of 10
66794	alanine metabolism	58.62	17 of 29
66794	non-pathway related	57.89	22 of 38
66794	propanol degradation	57.14	4 of 7
66794	citric acid cycle	57.14	8 of 14
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	tryptophan metabolism	55.26	21 of 38
66794	lipid metabolism	54.84	17 of 31
66794	degradation of pentoses	53.57	15 of 28
66794	degradation of sugar acids	52	13 of 25
66794	histidine metabolism	51.72	15 of 29
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	kanosamine biosynthesis II	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	cyclohexanol degradation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	isoprenoid biosynthesis	50	13 of 26
66794	selenocysteine biosynthesis	50	3 of 6
66794	vitamin B1 metabolism	46.15	6 of 13
66794	sulfate reduction	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	oxidative phosphorylation	45.05	41 of 91
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	lysine metabolism	42.86	18 of 42
66794	glutathione metabolism	42.86	6 of 14
66794	ascorbate metabolism	40.91	9 of 22
66794	myo-inositol biosynthesis	40	4 of 10
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	urea cycle	38.46	5 of 13
66794	tyrosine metabolism	35.71	5 of 14
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	glycine metabolism	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	mevalonate metabolism	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	phenol degradation	25	5 of 20
66794	toluene degradation	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116765	-	+	+	-	-	+	-	+	-	-	+	+	+	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
16395	soil of an industrial site	South Tyrol, Bozen	Italy	ITA	Europe
116765	Environment, Soil	Tyrol	Italy	ITA	Europe	2008

Taxonmaps

69479

Global distribution of 16S sequence GQ161990 (>99% sequence identity) for Albibacterium bauzanense subclade from Microbeatlas

Aquatic Samples	39
Soil Samples	336
Animal Samples	134
Plant Samples	19
Total Samples	528

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16395	1	Risk group (German classification) According to TRBA 466
116765	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM433976v1 assembly for Albibacterium bauzanense DSM 22554	contig	GCA_004339765	653929.4	2734482284	653929	77.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16395	Pedobacter bauzanensis strain BZ42 16S ribosomal RNA gene, partial sequence	GQ161990	1514		653929

GC content

@ref	GC-content (mol%)	Method
16395	36.5	high performance liquid chromatography (HPLC)
29696	36.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM433976v1 assembly for Albibacterium bauzanense DSM 22554
NCBI: GCA_004339765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.92	no
125439	motility	BacteriaNetⓘ	no	71.03	no
125439	gram_stain	BacteriaNetⓘ	negative	99.17	no
125439	spore_formation	BacteriaNetⓘ	no	99.87	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pedobacter bauzanensis strain DSM 22554
PATRIC: 653929.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.97	yes
125438	anaerobic	anaerobicⓘ	no	96.87	yes
125438	spore-forming	spore-formingⓘ	no	90.15	no
125438	aerobic	aerobicⓘ	yes	80.58	no
125438	thermophilic	thermophileⓘ	no	96.26	yes
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pedobacter bauzanensis sp. nov., isolated from soil.	Zhang DC, Schinner F, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.018903-0	2009

References

#16395	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22554
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26080	IJSEM 2592 2010 ( DOI 10.1099/ijs.0.018903-0 , PubMed 20023057 )
#29696	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26080
#37689	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116765	Collection of Institut Pasteur ; Curators of the CIP; CIP 110134
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Albibacterium bauzanense (DSM 22554, CGMCC 1.10187, CIP 110134)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004339765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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