Strain identifier

BacDive ID: 14116

Type strain: Yes

Species: Albibacterium bauzanense

Strain Designation: BZ42

Strain history: CIP <- 2010, R. Margesin, Innsbruck Univ., Innsbruck, Austria: strain BZ42

NCBI tax ID(s): 653929 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 16395

BacDive-ID: 14116

DSM-Number: 22554

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Albibacterium bauzanense BZ42 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil of an industrial site.

NCBI tax id

  • NCBI tax id: 653929
  • Matching level: species

strain history

@refhistory
376892010, R. Margesin, Innsbruck Univ., Innsbruck, Austria: strain BZ42
16395<- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ42
116765CIP <- 2010, R. Margesin, Innsbruck Univ., Innsbruck, Austria: strain BZ42

doi: 10.13145/bacdive14116.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Albibacterium
  • species: Albibacterium bauzanense
  • full scientific name: Albibacterium bauzanense (Zhang et al. 2010) García-López et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Pedobacter bauzanensis

@ref: 16395

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Albibacterium

species: Albibacterium bauzanense

full scientific name: Albibacterium bauzanense (Zhang et al. 2010) García-López et al. 2020

strain designation: BZ42

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29696negative1.9-2.2 µm0.5-0.6 µmrod-shapedno
116765negativerod-shapedno
69480negative97.966

pigmentation

  • @ref: 29696
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16395R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
37689MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
116765CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

@refgrowthtypetemperature
16395positivegrowth25
29696positivegrowth05-25
29696positiveoptimum20-25
37689positivegrowth25

culture pH

@refabilitytypepH
29696positivegrowth07-08
29696positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29696aerobe
116765obligate aerobe

spore formation

@refspore formationconfidence
69480no90.145
69481no100

halophily

@refsaltgrowthtested relationconcentration
29696NaClpositivegrowth0-3 %
29696NaClpositiveoptimum0-3 %

observation

  • @ref: 29696
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2969617306maltose+carbon source
2969637684mannose+carbon source
29696506227N-acetylglucosamine+carbon source
2969617814salicin+carbon source
2969617992sucrose+carbon source
296964853esculin+hydrolysis
11676517632nitrate-reduction
11676516301nitrite-reduction

metabolite production

  • @ref: 116765
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29696alkaline phosphatase+3.1.3.1
29696catalase+1.11.1.6
29696cytochrome oxidase+1.9.3.1
116765oxidase+
116765catalase+1.11.1.6
116765urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116765-++--+-+--++++-+++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
16395soil of an industrial siteSouth Tyrol, BozenItalyITAEurope
116765Environment, SoilTyrolItalyITAEurope2008

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_27672.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_13716;97_16698;98_20722;99_27672&stattab=map
  • Last taxonomy: Albibacterium bauzanense subclade
  • 16S sequence: GQ161990
  • Sequence Identity:
  • Total samples: 528
  • soil counts: 336
  • aquatic counts: 39
  • animal counts: 134
  • plant counts: 19

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
163951Risk group (German classification)
1167651Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16395
  • description: Pedobacter bauzanensis strain BZ42 16S ribosomal RNA gene, partial sequence
  • accession: GQ161990
  • length: 1514
  • database: nuccore
  • NCBI tax ID: 653929

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Albibacterium bauzanense DSM 22554GCA_004339765contigncbi653929
66792Pedobacter bauzanensis strain DSM 22554653929.4wgspatric653929
66792Pedobacter bauzanensis DSM 225542734482284draftimg653929

GC content

@refGC-contentmethod
1639536.5high performance liquid chromatography (HPLC)
2969636.5

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.966yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.871yes
69480spore-formingspore-formingAbility to form endo- or exosporesno90.145no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes80.582no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.255yes
69480flagellatedmotile2+Ability to perform flagellated movementno89yes

External links

@ref: 16395

culture collection no.: DSM 22554, CGMCC 1.10187, CIP 110134

straininfo link

  • @ref: 83283
  • straininfo: 371122

literature

  • topic: Phylogeny
  • Pubmed-ID: 20023057
  • title: Pedobacter bauzanensis sp. nov., isolated from soil.
  • authors: Zhang DC, Schinner F, Margesin R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.018903-0
  • year: 2009
  • mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Sphingobacterium/*classification/genetics/*isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16395Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22554)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22554
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29696Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2608028776041
37689Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7959
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83283Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID371122.1StrainInfo: A central database for resolving microbial strain identifiers
116765Curators of the CIPCollection of Institut Pasteur (CIP 110134)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110134