Name: Nitrincola alkalilacustris ZV-19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141100

Type strain:

Species: Nitrincola alkalilacustris

Strain Designation: ZV-19

Culture col. no.: DSM 29817, NCAIM B.02612, NCAIM B 02612

Strain history: <- A. K. Borsodi, Eötvös Loránd Univ. Budapest, Hungary; ZV-19

NCBI tax ID(s): 1571224 (species)

SI-ID 401396

DSM 29817

Section

Nitrincola alkalilacustris ZV-19 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from the alkaline water of Zab-szek soda pan.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Nitrincola*
	Species	**Nitrincola alkalilacustris**
	Full Scientific Name (LPSN)	Nitrincola alkalilacustris Borsodi et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #44009]	Gram stain	negative

[Ref.: #44009]	Cell length	1.5-1.8 µm

[Ref.: #44009]	Cell width	0.5-0.8 µm

[Ref.: #44009]	Cell shape	rod-shaped

[Ref.: #44009]	Motility	yes

[Ref.: #44009]	Colony color	whitish-cream
[Ref.: #44009]	Colony shape	circular
[Ref.: #44009]	Incubation period	1-2 days
[Ref.: #44009]	Cultivation medium used	Reasoners 2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44009]

Culture medium

Reasoners 2A agar

[Ref.: #44009]

Culture medium growth

[Ref.: #44009]

Culture medium composition

expand / minimize

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #64979]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #44009]	growth	10-37 °C
[Ref.: #44009]	optimum	20-28 °C
[Ref.: #64979]	growth	25 °C

[Ref.: #64979]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #44009]			optimum	8.0-9.0
[Ref.: #44009]			growth	7.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44009]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44009]		NaCl		growth	0-10	%
[Ref.: #44009]		NaCl		optimum	0-7	%

[Ref.: #44009]	Observation	smooth and convex colonies
[Ref.: #44009]	Observation	the predominant quinone is Q-8.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44009]	casein	-	hydrolysis
[Ref.: #44009]	citrate ChEBI	+	assimilation
[Ref.: #44009]	D-glucose ChEBI	-	builds acid from
[Ref.: #44009]	D-glucose ChEBI	-	builds gas from
[Ref.: #44009]	esculin ChEBI	-	hydrolysis
[Ref.: #44009]	gelatin ChEBI	+	hydrolysis
[Ref.: #44009]	nitrate ChEBI	+	reduction
[Ref.: #44009]	starch ChEBI	-	hydrolysis
[Ref.: #44009]	tween 80 ChEBI	-	hydrolysis
[Ref.: #44009]	tyrosine ChEBI	+	assimilation
[Ref.: #44009]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #44009]		indole ChEBI	no
[Ref.: #44009]		sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44009]	acid phosphatase	+	3.1.3.2
[Ref.: #44009]	alkaline phosphatase	-	3.1.3.1
[Ref.: #44009]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44009]	alpha-fucosidase	-	3.2.1.51
[Ref.: #44009]	alpha-galactosidase	-	3.2.1.22
[Ref.: #44009]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44009]	alpha-mannosidase	-	3.2.1.24
[Ref.: #44009]	beta-galactosidase	-	3.2.1.23
[Ref.: #44009]	beta-glucosidase	-	3.2.1.21
[Ref.: #44009]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44009]	catalase	+	1.11.1.6
[Ref.: #44009]	cystine arylamidase	-	3.4.11.3
[Ref.: #44009]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44009]	esterase (C 4)	+
[Ref.: #44009]	esterase Lipase (C 8)	+
[Ref.: #44009]	leucine arylamidase	-	3.4.11.1
[Ref.: #44009]	lipase (C 14)	-
[Ref.: #44009]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #44009]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44009]	phosphatase	-
[Ref.: #44009]	trypsin	-	3.4.21.4
[Ref.: #44009]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44009]

Fatty acid	Percentage
C18:1ω7c	63
C16:1ω7c	19.1
C16:0	10.1
C10:0 3OH	2.8
C12:0	1.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44009]	Sample type/isolated from	the alkaline water of Zab-szek soda pan
[Ref.: #44009]	Geographic location (country and/or sea, region)	Kiskunsag National Park
[Ref.: #44009]	Country	Hungary
[Ref.: #44009]	Country ISO 3 Code	HUN
[Ref.: #44009]	Continent	Europe

[Ref.: #64979]	Sample type/isolated from	alkaline water of a soda pan
[Ref.: #64979]	Geographic location (country and/or sea, region)	Kiskunság National Park, Zab-szék (46° 50.190' N 19° 10.283'' E)
[Ref.: #64979]	Country	Hungary
[Ref.: #64979]	Country ISO 3 Code	HUN
[Ref.: #64979]	Continent	Europe
[Ref.: #64979]	Geographic location	46.8365°/19.1714°
* marker position based on {}

Isolation sources categories

#Condition	#Alkaline	-
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN650603 (>99% sequence identity) for Nitrincola alkalilacustris subclade from Microbeatlas

Aquatic Samples	121
Soil Samples	63
Animal Samples	60
Plant Samples	17
Total Samples	261

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64979]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64979]	Nitrincola sp. ZV-19 partial 16S rRNA gene, isolate ZV-19	LN650603	1473	ENA	1571224 tax ID

[Ref.: #44009]	GC-content	54.5 mol%	sequence analysis
[Ref.: #64979]	GC-content	54.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #64979]

Culture collection no.

DSM 29817, NCAIM B.02612, NCAIM B 02612

[Ref.: #96854]

SI-ID 401396

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrincola tapanii sp. nov., a novel alkaliphilic bacterium from An Indian Soda Lake.	Joshi A, Thite S, Dhotre D, Moorthy M, Joseph N, Ramana VV, Shouche Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003883	2020	*
Phylogeny	Nitrincola alkalilacustris sp. nov. and Nitrincola schmidtii sp. nov., alkaliphilic bacteria isolated from soda pans, and emended description of the genus Nitrincola.	Borsodi AK, Korponai K, Schumann P, Sproer C, Felfoldi T, Marialigeti K, Szili-Kovacs T, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.002437	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44009

Andrea K. Borsodi, Kristóf Korponai, Peter Schumann, Cathrin Spröer, Tamás Felföldi, Károly Márialigeti, Tibor Szili-Kovács, Erika Tóth: Nitrincola alkalilacustris sp. nov. and Nitrincola schmidtii sp. nov., alkaliphilic bacteria isolated from soda pans, and emended description of the genus Nitrincola. IJSEM 67: 5159 - 5164 2017 ( DOI 10.1099/ijsem.0.002437 , PubMed 29056114 )

#64979

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29817

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96854

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401396.1 )

* These data were automatically processed and therefore are not curated

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