Name: Nioella aestuarii MME-018
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141099

Type strain:

Species: Nioella aestuarii

Strain Designation: MME-018

Culture col. no.: KCCM 43135, JCM 30752

Strain history: M.-J. Seo; Incheon Natl. Univ., South Korea; MME-018.

NCBI tax ID(s): 1662864 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Nioella aestuarii MME-018 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from tidal flat sediment of Muui-do.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Nioella*
	Species	**Nioella aestuarii**
	Full Scientific Name (LPSN)	Nioella aestuarii Cha et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #44008]	Gram stain	negative

[Ref.: #44008]	Cell length	1.8-2.0 µm

[Ref.: #44008]	Cell width	0.8-1.0 mm

[Ref.: #44008]	Cell shape	rod-shaped

[Ref.: #44008]	Motility	no

[Ref.: #44008]	Colony size	0.5-1.0 mm
[Ref.: #44008]	Colony color	white
[Ref.: #44008]	Colony shape	circular
[Ref.: #44008]	Incubation period	3 days
[Ref.: #44008]	Cultivation medium used	marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44008]

Culture medium

Marine agar (MA)

[Ref.: #44008]

Culture medium growth

		Temperature
[Ref.: #44008]	growth	4-40 °C
[Ref.: #44008]	optimum	25-30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #44008]			optimum	7
[Ref.: #44008]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44008]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44008]		NaCl		growth	1-4	%
[Ref.: #44008]		NaCl		optimum	2	%

[Ref.: #44008]	Observation	requires Na+,Ca2+, or Mg2+ions for growth
[Ref.: #44008]	Observation	the dominant respiratory quinone is Q-10
[Ref.: #67770]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44008]	acetate ChEBI	+	assimilation
[Ref.: #44008]	benzoate ChEBI	-	assimilation
[Ref.: #44008]	casein	-	hydrolysis
[Ref.: #44008]	cellobiose ChEBI	-	builds acid from
[Ref.: #44008]	cellobiose ChEBI	+	assimilation
[Ref.: #44008]	citrate ChEBI	+	assimilation
[Ref.: #44008]	D-fructose ChEBI	-	assimilation
[Ref.: #44008]	D-galactose ChEBI	+	assimilation
[Ref.: #44008]	D-galactose ChEBI	+	builds acid from
[Ref.: #44008]	D-glucose ChEBI	-	assimilation
[Ref.: #44008]	D-mannitol ChEBI	+	assimilation
[Ref.: #44008]	D-mannose ChEBI	+	assimilation
[Ref.: #44008]	D-mannose ChEBI	+	builds acid from
[Ref.: #44008]	D-ribose ChEBI	-	assimilation
[Ref.: #44008]	D-sorbitol ChEBI	+	assimilation
[Ref.: #44008]	D-xylose ChEBI	-	assimilation
[Ref.: #44008]	gelatin ChEBI	-	hydrolysis
[Ref.: #44008]	glucose ChEBI	+	fermentation
[Ref.: #44008]	glycerol ChEBI	+	assimilation
[Ref.: #44008]	L-arabinose ChEBI	-	assimilation
[Ref.: #44008]	L-glutamate ChEBI	+	assimilation
[Ref.: #44008]	L-ornithine ChEBI	+	assimilation
[Ref.: #44008]	L-rhamnose ChEBI	+	assimilation
[Ref.: #44008]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #44008]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #44008]	lactose ChEBI	+	assimilation
[Ref.: #44008]	malate ChEBI	+	assimilation
[Ref.: #44008]	maltose ChEBI	-	assimilation
[Ref.: #44008]	melibiose ChEBI	-	assimilation
[Ref.: #44008]	melibiose ChEBI	+	assimilation
[Ref.: #44008]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #44008]	myo-inositol ChEBI	+	assimilation
[Ref.: #44008]	nitrate ChEBI	+	reduction
[Ref.: #44008]	raffinose ChEBI	-	builds acid from
[Ref.: #44008]	raffinose ChEBI	+	assimilation
[Ref.: #44008]	sodium formate ChEBI	-	assimilation
[Ref.: #44008]	starch ChEBI	-	hydrolysis
[Ref.: #44008]	sucrose ChEBI	-	assimilation
[Ref.: #44008]	trehalose ChEBI	-	builds acid from
[Ref.: #44008]	trehalose ChEBI	+	assimilation
[Ref.: #44008]	tween 20 ChEBI	-	hydrolysis
[Ref.: #44008]	tween 40 ChEBI	-	hydrolysis
[Ref.: #44008]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #44008]	ampicillin ChEBI	yes	10	µg/mL
[Ref.: #44008]	carbenicillin ChEBI	yes	100	µg/mL
[Ref.: #44008]	cephalothin ChEBI	yes	30	µg/mL
[Ref.: #44008]	ciprofloxacin ChEBI	yes	10	µg/mL
[Ref.: #44008]	erythromycin ChEBI	yes	25	µg/mL
[Ref.: #44008]	gentamicin ChEBI				yes	30	µg/mL
[Ref.: #44008]	kanamycin ChEBI	yes	30	µg/mL
[Ref.: #44008]	lincomycin ChEBI	yes	15	µg/mL
[Ref.: #44008]	neomycin ChEBI	yes	30	µg/mL
[Ref.: #44008]	norfloxacin ChEBI	yes	30	µg/mL
[Ref.: #44008]	novobiocin ChEBI	yes	10	µg/mL
[Ref.: #44008]	penicillin g ChEBI	yes	20	Unit
[Ref.: #44008]	polymyxin b ChEBI	yes	100	Unit
[Ref.: #44008]	streptomycin ChEBI	yes	50	µg/mL
[Ref.: #44008]	tetracycline ChEBI	yes	30	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #44008]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44008]	acid phosphatase	+	3.1.3.2
[Ref.: #44008]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44008]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44008]	alpha-fucosidase	-	3.2.1.51
[Ref.: #44008]	alpha-galactosidase	-	3.2.1.22
[Ref.: #44008]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44008]	alpha-mannosidase	-	3.2.1.24
[Ref.: #44008]	arginine dihydrolase	+	3.5.3.6
[Ref.: #44008]	beta-galactosidase	+	3.2.1.23
[Ref.: #44008]	beta-glucosidase	-	3.2.1.21
[Ref.: #44008]	beta-glucuronidase	-	3.2.1.139
[Ref.: #44008]	catalase	+	1.11.1.6
[Ref.: #44008]	cystine arylamidase	-	3.4.11.3
[Ref.: #44008]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44008]	esterase Lipase (C 8)	+
[Ref.: #44008]	leucine arylamidase	+	3.4.11.1
[Ref.: #44008]	lipase (C 14)	-
[Ref.: #44008]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #44008]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44008]	protease	-
[Ref.: #44008]	trypsin	-	3.4.21.4
[Ref.: #44008]	urease	-	3.5.1.5
[Ref.: #44008]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44008]

Fatty acid	Percentage
C18:1ω7c and/or C18:1ω6c	54.7
C16:0	10.4
CycloC19:0ω8c	10.1
11-methyl C18:1ω7	8.9
C16:0 2OH	4.9
C18:0	2.4
C12:0 3OH	1.9
C10:0 3OH	1.8
C16:1ω7c and/or C16:1ω6c	1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44008]	Sample type/isolated from	tidal flat sediment of Muui-do
[Ref.: #44008]	Geographic location (country and/or sea, region)	Incheon
[Ref.: #44008]	Country	Republic of Korea
[Ref.: #44008]	Country ISO 3 Code	KOR
[Ref.: #44008]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tidal flat of the Muui-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP410676 (>99% sequence identity) for Nioella aestuarii from Microbeatlas

Aquatic Samples	5
Soil Samples	1
Animal Samples	1
Plant Samples
Total Samples	7

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44008]	Nioella aestuarii strain MME-018 16S ribosomal RNA gene, partial sequence	KP410676		GenBank ENA

[Ref.: #44008]	GC-content	61.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	61.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #44008]

Culture collection no.

KCCM 43135, JCM 30752

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nioella ostreopsis sp. nov., isolated from toxic dinoflagellate, Ostreopsis lenticularis.	Yang Q, Jiang Z, Zhou X, Zhang R, Wu Y, Lou L, Ma Z, Wang D, Ge Y, Zhang X, Yu X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003816	2020	*
Phylogeny	Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat.	Cha IT, Cho ES, Park JM, Yeh JY, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002442	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44008

In-Tae Cha, Eui-Sang Cho, Jung-Min Park, Jung-Yong Yeh, Myung-Ji Seo: Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat. IJSEM 67: 5205 - 5210 2017 ( DOI 10.1099/ijsem.0.002442 , PubMed 29056115 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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