Name: Caballeronia concitans AU12121
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141019

Type strain:

Species: Caballeronia concitans

Strain Designation: AU12121, R-46585

Culture col. no.: LMG 29315, CCUG 68414, CIP 110999

Strain history: CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-46585 <- JJ. LiPuma, USA: strain AU12121

NCBI tax ID(s): 1777133 (species)

SI-ID 410183

CCUG 68414

Section

Caballeronia concitans AU12121 is an aerobe, mesophilic, motile bacterium that was isolated from Human.

motile
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia concitans**
	Full Scientific Name (LPSN)	Caballeronia concitans (Peeters et al. 2016) Dobritsa et al. 2017

Synonym

Burkholderia concitans

Information on morphological and physiological properties Morphology

[Ref.: #118722]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #118722]	Cell shape	rod-shaped

[Ref.: #118722]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.472

Information on culture and growth conditions Culture and growth conditions

[Ref.: #118722]

Culture medium

CIP Medium 72

[Ref.: #118722]

Culture medium growth

[Ref.: #118722]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #63483]			growth	30 °C

[Ref.: #63483]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63483]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.953

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63483]	Sample type/isolated from	Human
[Ref.: #63483]	Sampling date	2006
[Ref.: #63483]	Country	USA
[Ref.: #63483]	Country ISO 3 Code	USA
[Ref.: #63483]	Continent	North America

[Ref.: #118722]	Sample type/isolated from	Human
[Ref.: #118722]	Country	United States of America
[Ref.: #118722]	Country ISO 3 Code	USA
[Ref.: #118722]	Continent	North America
[Ref.: #118722]	Isolation date	2006-01-02
* marker position based on {}

Isolation sources categories

#Host

#Human

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #118722]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia concitans LMG 29315	GCA_001544615	contig	GenBank	1777133 tax ID	*
[Ref.: #66792]	Burkholderia sp. strain LMG 29315	36773.22	wgs	PATRIC	36773 tax ID	*
[Ref.: #66792]	Caballeronia concitans LMG 29315	2724679455	draft	JGI IMG/M	1777133 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia sp. strain LMG 29315 PATRIC: 36773.22
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sp. strain LMG 29315 PATRIC: 36773.22
[Ref.: #69480]	gram-positive	no	98.209	no
[Ref.: #69480]	anaerobic	no	98.139	no
[Ref.: #69480]	halophile	no	94.556	no
[Ref.: #69480]	spore-forming	no	94.782	no
[Ref.: #69480]	glucose-util	yes	90.44	no
[Ref.: #69480]	aerobic	yes	89.175	yes
[Ref.: #69480]	motile	yes	89.068	no
[Ref.: #69480]	flagellated	no	84.15	no
[Ref.: #69480]	thermophile	no	98.875	yes
[Ref.: #69480]	glucose-ferment	no	90.366	no

Availability in culture collections External links

[Ref.: #43568]

Culture collection no.

LMG 29315, CCUG 68414, CIP 110999

[Ref.: #96834]

SI-ID 410183

Literature:

	Title	Authors	Journal	DOI	Year
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43568

Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )

#63483 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68414

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96834

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410183.1 )

#118722 Collection of Institut Pasteur ; Curators of the CIP; CIP 110999
* These data were automatically processed and therefore are not curated

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Burkholderia sp. strain LMG 29315

Burkholderia sp. strain LMG 29315

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