Caballeronia catudaia (LMG 29318, CCUG 68411, CIP 111002)

Name: Caballeronia catudaia (LMG 29318, CCUG 68411, CIP 111002)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141018

Type strain

Strain Designation R-50699

Culture col. no. LMG 29318 CCUG 68411 CIP 111002 R-50699

NCBI tax ID(s) 1777136

Special Collections CCUG Literature strains CIP

History CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-50699

Links

Caballeronia catudaia R-50699 is an aerobe, Gram-negative, motile bacterium that was isolated from Rhizosphere soil.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 412161

LMG 29318,CCUG 68411

@ref 20215

Last LPSN update 2026-02-09 11:33:47

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Caballeronia

Species Caballeronia catudaia

Full scientific name Caballeronia catudaia (Peeters et al. 2016) Dobritsa et al. 2017

Synonyms (1)

Burkholderia catudaia

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438	negative			95.5
117218	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
117218	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
63480	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
63480	aerobe
125438	aerobe	94.051
125439	obligate aerobe	99.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere
#Host	#Plants	-

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
63480	Rhizosphere soil	2013	South Africa	ZAF	Africa
117218	Environment, Rhizosphere soil		South Africa	ZAF	Africa	2013-01-02

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
117218	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM154475v2 assembly for Caballeronia catudaia	contig	GCA_001544755	1777136.3	2724679461	1777136	47.85
66792	Burkholderia sp. strain LMG 29318	contig		36773.25		36773	41.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Burkholderia catudaia partial 16S rRNA gene, type strain LMG 29318T	LT158616	1484		1777136

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Caballeronia catudaia LMG 29318
NCBI: GCA_001544755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	88.00	no
125439	motility	BacteriaNetⓘ	yes	61.60	no
125439	gram_stain	BacteriaNetⓘ	negative	88.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia sp. strain LMG 29318
PATRIC: 36773.25

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.50	no
125438	anaerobic	anaerobicⓘ	no	96.48	yes
125438	spore-forming	spore-formingⓘ	no	87.31	no
125438	aerobic	aerobicⓘ	yes	94.05	yes
125438	thermophilic	thermophileⓘ	no	99.33	no
125438	flagellated	motile2+ⓘ	yes	83.86	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.	Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN, Steenkamp ET.	Front Microbiol	10.3389/fmicb.2017.01154	2017
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43568	Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )
#63480	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68411
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#117218	Collection of Institut Pasteur ; Curators of the CIP; CIP 111002
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caballeronia catudaia (LMG 29318, CCUG 68411, CIP 111002)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001544755

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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