Name: Caballeronia catudaia R-50699
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141018

Type strain:

Species: Caballeronia catudaia

Strain Designation: R-50699

Culture col. no.: LMG 29318, CCUG 68411, CIP 111002

Strain history: CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-50699

NCBI tax ID(s): 1777136 (species)

SI-ID 412161

CCUG 68411

Section

Caballeronia catudaia R-50699 is an aerobe, mesophilic, motile bacterium that was isolated from Rhizosphere soil.

motile
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia catudaia**
	Full Scientific Name (LPSN)	Caballeronia catudaia (Peeters et al. 2016) Dobritsa et al. 2017

Synonym

Burkholderia catudaia

Information on morphological and physiological properties Morphology

[Ref.: #117218]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #117218]	Cell shape	rod-shaped

[Ref.: #117218]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %91.329

Information on culture and growth conditions Culture and growth conditions

[Ref.: #117218]

Culture medium

CIP Medium 72

[Ref.: #117218]

Culture medium growth

[Ref.: #117218]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #63480]			growth	30 °C

[Ref.: #63480]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63480]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.982

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63480]	Sample type/isolated from	Rhizosphere soil
[Ref.: #63480]	Sampling date	2013
[Ref.: #63480]	Country	South Africa
[Ref.: #63480]	Country ISO 3 Code	ZAF
[Ref.: #63480]	Continent	Africa

[Ref.: #117218]	Sample type/isolated from	Environment, Rhizosphere soil
[Ref.: #117218]	Country	South Africa
[Ref.: #117218]	Country ISO 3 Code	ZAF
[Ref.: #117218]	Continent	Africa
[Ref.: #117218]	Isolation date	2013-01-02
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere
#Host	#Plants	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #117218]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia catudaia LMG 29318	GCA_001544755	contig	GenBank	1777136 tax ID	*
[Ref.: #66792]	Burkholderia sp. strain LMG 29318	36773.25	wgs	PATRIC	36773 tax ID	*
[Ref.: #66792]	Caballeronia catudaia LMG 29318	2724679461	draft	JGI IMG/M	1777136 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia sp. strain LMG 29318 PATRIC: 36773.25
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sp. strain LMG 29318 PATRIC: 36773.25
[Ref.: #69480]	gram-positive	no	98.254	no
[Ref.: #69480]	anaerobic	no	98.152	yes
[Ref.: #69480]	halophile	no	94.684	no
[Ref.: #69480]	spore-forming	no	92.428	no
[Ref.: #69480]	glucose-util	yes	88.758	no
[Ref.: #69480]	aerobic	yes	86.404	no
[Ref.: #69480]	motile	yes	87.953	no
[Ref.: #69480]	flagellated	no	83.327	no
[Ref.: #69480]	thermophile	no	99.252	no
[Ref.: #69480]	glucose-ferment	no	89.896	no

Availability in culture collections External links

[Ref.: #43568]

Culture collection no.

LMG 29318, CCUG 68411, CIP 111002

[Ref.: #96833]

SI-ID 412161

Literature:

	Title	Authors	Journal	DOI	Year
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43568

Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )

#63480 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68411

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96833

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID412161.1 )

#117218 Collection of Institut Pasteur ; Curators of the CIP; CIP 111002
* These data were automatically processed and therefore are not curated

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Burkholderia sp. strain LMG 29318

Burkholderia sp. strain LMG 29318

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