Caballeronia fortuita (LMG 29320, CCUG 68409, CIP 111004)

Name: Caballeronia fortuita (LMG 29320, CCUG 68409, CIP 111004)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141020

Type strain

Strain Designation R-50722

Culture col. no. LMG 29320 CCUG 68409 CIP 111004 R-50722

NCBI tax ID(s) 1777138

Special Collections CCUG Literature strains CIP

History CIP <- 2016, P. Vandamme, Gent Univ., Gent, Belgium: strain R-50722

Links

Caballeronia fortuita R-50722 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Rhizosphere soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408793

LMG 29320,CCUG 68409

@ref 20215

Last LPSN update 2026-05-29 08:39:51

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Caballeronia

Species Caballeronia fortuita

Full scientific name Caballeronia fortuita (Peeters et al. 2016) Dobritsa et al. 2017

Synonyms (1)

Burkholderia fortuita

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
119436	negative	rod-shaped
125438	negative			98

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
119436	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
63478	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
63478	aerobe
125438	aerobe	92.754
125439	obligate aerobe	99.828

Spore formation

@ref	Spore formation	Confidence
125439		95.225

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere
#Host	#Plants	-

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
63478	Rhizosphere soil	2013	South Africa	ZAF	Africa
119436	Environment, Rhizosphere soil		South Africa	ZAF	Africa	2013-01-02

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
119436	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Burkholderia sp. LMG 29320 assembly for Caballeronia fortuita	contig	GCA_001544835	1777138.4	2713896992	1777138	69.74
66792	Burkholderia sp. strain LMG 29320	contig		36773.27		36773	64.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Burkholderia fortuita partial 16S rRNA gene, type strain LMG 29320T	LT158618	1484		1777138

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Burkholderia sp. LMG 29320 assembly for Caballeronia fortuita
NCBI: GCA_001544835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.83	no
125439	gram_stain	BacteriaNetⓘ	negative	80.22	no
125439	motility	BacteriaNetⓘ	yes	49.39	no
125439	spore_formation	BacteriaNetⓘ	no	95.23	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia sp. strain LMG 29320
PATRIC: 36773.27

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	96.95	yes
125438	spore-forming	spore-formingⓘ	no	87.47	no
125438	aerobic	aerobicⓘ	yes	92.75	yes
125438	thermophilic	thermophileⓘ	no	98.33	yes
125438	flagellated	motile2+ⓘ	yes	85.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Exploiting the biocatalytic potential of co-expressed l-fucose isomerase and d-tagatose 3-epimerase for the biosynthesis of 6-deoxy-l-sorbose.	Waheed Iqbal M, Tang X, Riaz T, Mahmood S, Zhang Y, Zhao M, Yun J, Li J, Qi X.	Bioorg Chem	10.1016/j.bioorg.2024.107189	2024
Enzymology	Characterization of a d-tagatose 3-epimerase from Caballeronia fortuita and its application in rare sugar production.	Li S, Chen Z, Zhang W, Guang C, Mu W.	Int J Biol Macromol	10.1016/j.ijbiomac.2019.07.112	2019
	Encephalartos natalensis, Their Nutrient-Cycling Microbes and Enzymes: A Story of Successful Trade-Offs.	Ndlovu S, Suinyuy TN, Perez-Fernandez MA, Magadlela A.	Plants (Basel)	10.3390/plants12051034	2023
	Metagenomics of African Empogona and Tricalysia (Rubiaceae) reveals the presence of leaf endophytes.	Verstraete B, Janssens S, De Block P, Asselman P, Mendez G, Ly S, Hamon P, Guyot R.	PeerJ	10.7717/peerj.15778	2023
Genetics	A Novel d-Allulose 3-Epimerase Gene from the Metagenome of a Thermal Aquatic Habitat and d-Allulose Production by Bacillus subtilis Whole-Cell Catalysis.	Patel SN, Kaushal G, Singh SP.	Appl Environ Microbiol	10.1128/aem.02605-19	2020
Genetics	Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.	Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Blom J, Whitman WB, Venter SN, Steenkamp ET.	Front Microbiol	10.3389/fmicb.2017.01154	2017
	Biocatalytic Synthesis of D-Allulose Using Novel D-Tagatose 3-Epimerase From Christensenella minuta.	Wang Y, Ravikumar Y, Zhang G, Yun J, Zhang Y, Parvez A, Qi X, Sun W.	Front Chem	10.3389/fchem.2020.622325	2020
	Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.	Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme P	Front Microbiol	10.3389/fmicb.2016.00877	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43568	Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour Samadpour: Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. IJSEM 67: 3846 - 3853 2017 ( DOI 10.1099/ijsem.0.002202 , PubMed 28879843 )
#63478	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 68409
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#119436	Collection of Institut Pasteur ; Curators of the CIP; CIP 111004
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caballeronia fortuita (LMG 29320, CCUG 68409, CIP 111004)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001544835

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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