Name: Paracoccus aerius 11410
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140969

Type strain:

Species: Paracoccus aerius

Strain Designation: 11410, 011410

Culture col. no.: CFCC 14285, KCTC 42845

Strain history: <- Han Xue, Dongxiaoful, Haidian district, Beijing, China

NCBI tax ID(s): 1915382 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Paracoccus aerius 11410 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from air at the foot of Xiangshan Mountain, Beijing, China.

colony-forming
Gram-negative
motile
oval-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus aerius**
	Full Scientific Name (LPSN)	Paracoccus aerius Xue et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43861]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99
[Ref.: #125438]	Gram stain	negative Confidence in %97.986

[Ref.: #43861]	Cell length	1.2-1.5 µm

[Ref.: #43861]	Cell width	0.7-0.9 µm

[Ref.: #43861]	Cell shape	oval-shaped

[Ref.: #43861]	Motility	yes

[Ref.: #43861]	Colony color	orange
[Ref.: #43861]	Colony shape	circular
[Ref.: #43861]	Cultivation medium used	Tryptic soy agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43861]

Culture medium

Marine agar (MA)

[Ref.: #43861]

Culture medium growth

[Ref.: #43861]

Culture medium

Tryptic soy agar

[Ref.: #43861]

Culture medium growth

		Temperature
[Ref.: #43861]	growth	4-37 °C
[Ref.: #43861]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43861]			optimum	8
[Ref.: #43861]			growth	4.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43861]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #125439]

Ability of spore formation

no Confidence in %95.9

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43861]		NaCl		growth	0-10	%(w/v)
[Ref.: #43861]		NaCl		optimum	0-2	%(w/v)

[Ref.: #43861]

Observation

quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43861]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #43861]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #43861]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #43861]	4-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43861]	adipate ChEBI	+/-	assimilation
[Ref.: #43861]	bromosuccinate ChEBI	+	carbon source
[Ref.: #43861]	cellobiose ChEBI	+	carbon source
[Ref.: #43861]	citrate ChEBI	+	carbon source
[Ref.: #43861]	D-alanine ChEBI	+	carbon source
[Ref.: #43861]	D-arabitol ChEBI	+	carbon source
[Ref.: #43861]	D-fructose ChEBI	+	carbon source
[Ref.: #43861]	D-fucose ChEBI	+	builds acid from
[Ref.: #43861]	D-galactose ChEBI	+	builds acid from
[Ref.: #43861]	D-galactose ChEBI	+	carbon source
[Ref.: #43861]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43861]	D-glucosaminic acid ChEBI	+	carbon source
[Ref.: #43861]	D-glucose ChEBI	+	builds acid from
[Ref.: #43861]	D-glucose ChEBI	+	fermentation
[Ref.: #43861]	D-glucose ChEBI	+/-	assimilation
[Ref.: #43861]	D-lyxose ChEBI	+	builds acid from
[Ref.: #43861]	D-malate ChEBI	+	assimilation
[Ref.: #43861]	D-mannitol ChEBI	+	assimilation
[Ref.: #43861]	D-mannose ChEBI	+	assimilation
[Ref.: #43861]	D-mannose ChEBI	+	builds acid from
[Ref.: #43861]	D-ribose ChEBI	+	builds acid from
[Ref.: #43861]	D-xylose ChEBI	+	builds acid from
[Ref.: #43861]	erythritol ChEBI	+	builds acid from
[Ref.: #43861]	erythritol ChEBI	+	carbon source
[Ref.: #43861]	esculin ChEBI	+	degradation
[Ref.: #43861]	formate ChEBI	+	carbon source
[Ref.: #43861]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #43861]	gelatin ChEBI	+	degradation
[Ref.: #43861]	glycerol ChEBI	+	carbon source
[Ref.: #43861]	glycyl L-aspartic acid ChEBI	+	carbon source
[Ref.: #43861]	L-alaninamide ChEBI	+	carbon source
[Ref.: #43861]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #43861]	L-arabinose ChEBI	+	assimilation
[Ref.: #43861]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43861]	L-arabinose ChEBI	+	carbon source
[Ref.: #43861]	L-asparagine ChEBI	+	carbon source
[Ref.: #43861]	L-fucose ChEBI	+	carbon source
[Ref.: #43861]	L-glutamate ChEBI	+	carbon source
[Ref.: #43861]	L-leucine ChEBI	+	carbon source
[Ref.: #43861]	L-proline ChEBI	+	carbon source
[Ref.: #43861]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #43861]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43861]	L-serine ChEBI	+	carbon source
[Ref.: #43861]	L-xylose ChEBI	+	builds acid from
[Ref.: #43861]	lactate ChEBI	+	carbon source
[Ref.: #43861]	malate ChEBI	+	assimilation
[Ref.: #43861]	maltose ChEBI	+/-	assimilation
[Ref.: #43861]	melibiose ChEBI	+	builds acid from
[Ref.: #43861]	melibiose ChEBI	+	carbon source
[Ref.: #43861]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #43861]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43861]	nitrate ChEBI	-	reduction
[Ref.: #43861]	phenylacetate ChEBI	+	assimilation
[Ref.: #43861]	potassium gluconate ChEBI	+/-	assimilation
[Ref.: #43861]	propionate ChEBI	+	carbon source
[Ref.: #43861]	starch ChEBI	+	degradation
[Ref.: #43861]	succinamate ChEBI	+	carbon source
[Ref.: #43861]	succinate ChEBI	+	carbon source
[Ref.: #43861]	tween 20 ChEBI	-	degradation
[Ref.: #43861]	tween 40 ChEBI	-	degradation
[Ref.: #43861]	tween 80 ChEBI	+	degradation
[Ref.: #43861]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43861]	amikacin ChEBI	yes	30	µg (disc)
[Ref.: #43861]	cefazolin ChEBI	yes	30	µg (disc)
[Ref.: #43861]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43861]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #43861]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #43861]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43861]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43861]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43861]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43861]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43861]	minocycline ChEBI	yes	30	µg (disc)
[Ref.: #43861]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43861]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43861]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43861]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #43861]	streptomycin ChEBI	yes	25	µg (disc)
[Ref.: #43861]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43861]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43861]		26	sulfamethoxazole ChEBI	yes	23.75	µg (disc)
[Ref.: #43861]		26	trimethoprim ChEBI	yes	23.75	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #43861]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43861]	acid phosphatase	+/-	3.1.3.2
[Ref.: #43861]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #43861]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43861]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43861]	catalase	+	1.11.1.6
[Ref.: #43861]	cystine arylamidase	+	3.4.11.3
[Ref.: #43861]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43861]	esterase (C 4)	+
[Ref.: #43861]	esterase Lipase (C 8)	+
[Ref.: #43861]	leucine arylamidase	+	3.4.11.1
[Ref.: #43861]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43861]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43861]	Sample type/isolated from	air at the foot of Xiangshan Mountain, Beijing, China
[Ref.: #43861]	Geographic location (country and/or sea, region)	Xiangshan Mountain, Beijing
[Ref.: #43861]	Country	China
[Ref.: #43861]	Country ISO 3 Code	CHN
[Ref.: #43861]	Continent	Asia
[Ref.: #43861]	Enrichment culture	Tryptic soy agar
[Ref.: #43861]	Enrichment culture duration	2 days
[Ref.: #43861]	Enrichment culture temperature	30 ̊C

[Ref.: #67771]	Sample type/isolated from	From air at the foot of Xiangshan Mountain
[Ref.: #67771]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

#Outdoor Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX664462 (>99% sequence identity) for Paracoccus from Microbeatlas

Aquatic Samples	1808
Soil Samples	1174
Animal Samples	7284
Plant Samples	1009
Total Samples	11275

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43861]	Paracoccus aerius strain 011410 16S ribosomal RNA gene, partial sequence	KX664462		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus aerius KCTC 42845	GCA_016757275	contig	GenBank ENA	1915382 tax ID	*
[Ref.: #66792]	Paracoccus aerius KCTC 42845	GCA_014656455	scaffold	GenBank ENA	1915382 tax ID	*
[Ref.: #66792]	Paracoccus aerius strain KCTC 42845	1915382.3	wgs	PATRIC	1915382 tax ID	*
[Ref.: #66792]	Paracoccus sp. KCTC 42845	2803913.3	wgs	PATRIC	1915382 tax ID	*

[Ref.: #43861]

GC-content

63.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paracoccus aerius KCTC 42845 NCBI: GCA_014656455.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.986	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.965	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	81.867	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	86.963	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	54.573	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paracoccus aerius KCTC 42845 NCBI: GCA_014656455
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	70.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	85.2

Availability in culture collections External links

[Ref.: #43861]

Culture collection no.

CFCC 14285, KCTC 42845

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus aerius sp. nov., isolated from air.	Xue H, Piao CG, Guo MW, Wang LF, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001976	2017	*
Phylogeny	Paracoccus lichenicola sp. nov., Isolated from Lichen.	Lang L, An DF, Jiang LQ, Li GD, Wang LS, Wang XY, Li QY, Jiang CL, Jiang Y	Curr Microbiol	10.1007/s00284-020-02321-8	2021	*
Phylogeny	Paracoccus everestensis sp. nov., a novel bacterium with great antioxidant capacity isolated from the north slope of Mount Everest.	Cui X, Liu Y, Xu Y, Chen T, Zhang S, Wang J, Yang R, Liu G, Zhang W, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.005562	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43861

Han Xue, Chun-gen Piao, Min-wei Guo, Lai-fa Wang, Yong Li: Paracoccus aerius sp. nov., isolated from air. IJSEM 67: 2586 - 2591 2017 ( DOI 10.1099/ijsem.0.001976 , PubMed 28758621 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Paracoccus aerius KCTC 42845

Paracoccus aerius KCTC 42845

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