Strain identifier
BacDive ID: 140969
Type strain:
Species: Paracoccus aerius
Strain Designation: 11410, 011410
Strain history: <- Han Xue, Dongxiaoful, Haidian district, Beijing, China
NCBI tax ID(s): 1915382 (species)
General
@ref: 43861
BacDive-ID: 140969
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, oval-shaped, colony-forming
description: Paracoccus aerius 11410 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from air at the foot of Xiangshan Mountain, Beijing, China.
NCBI tax id
- NCBI tax id: 1915382
- Matching level: species
strain history
- @ref: 67771
- history: <- Han Xue, Dongxiaoful, Haidian district, Beijing, China
doi: 10.13145/bacdive140969.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Paracoccus
- species: Paracoccus aerius
- full scientific name: Paracoccus aerius Xue et al. 2017
@ref: 43861
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Paracoccus
species: Paracoccus aerius
strain designation: 11410, 011410
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
43861 | negative | 1.2-1.5 µm | 0.7-0.9 µm | oval-shaped | yes | |
69480 | negative | 99.983 |
colony morphology
- @ref: 43861
- colony color: orange
- colony shape: circular
- medium used: Tryptic soy agar
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
43861 | Marine agar (MA) | yes |
43861 | Tryptic soy agar | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43861 | positive | growth | 4-37 | |
43861 | positive | optimum | 30 | mesophilic |
67771 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43861 | positive | growth | 4.5-10 | alkaliphile |
43861 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
43861 | facultative anaerobe |
67771 | aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.996 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43861 | NaCl | positive | growth | 0-10 %(w/v) |
43861 | NaCl | positive | optimum | 0-2 %(w/v) |
observation
- @ref: 43861
- observation: quinone Q-10
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43861 | 53424 | tween 20 | - | degradation |
43861 | 53423 | tween 40 | - | degradation |
43861 | 17632 | nitrate | - | reduction |
43861 | 15588 | D-malate | + | assimilation |
43861 | 16899 | D-mannitol | + | assimilation |
43861 | 16024 | D-mannose | + | assimilation |
43861 | 30849 | L-arabinose | + | assimilation |
43861 | 25115 | malate | + | assimilation |
43861 | 506227 | N-acetylglucosamine | + | assimilation |
43861 | 18401 | phenylacetate | + | assimilation |
43861 | 28847 | D-fucose | + | builds acid from |
43861 | 12936 | D-galactose | + | builds acid from |
43861 | 17634 | D-glucose | + | builds acid from |
43861 | 62318 | D-lyxose | + | builds acid from |
43861 | 16024 | D-mannose | + | builds acid from |
43861 | 16988 | D-ribose | + | builds acid from |
43861 | 65327 | D-xylose | + | builds acid from |
43861 | 17113 | erythritol | + | builds acid from |
43861 | 30849 | L-arabinose | + | builds acid from |
43861 | 62345 | L-rhamnose | + | builds acid from |
43861 | 65328 | L-xylose | + | builds acid from |
43861 | 28053 | melibiose | + | builds acid from |
43861 | 16763 | 2-oxobutanoate | + | carbon source |
43861 | 30916 | 2-oxoglutarate | + | carbon source |
43861 | 18240 | 4-hydroxy-L-proline | + | carbon source |
43861 | 73706 | bromosuccinate | + | carbon source |
43861 | 17057 | cellobiose | + | carbon source |
43861 | 16947 | citrate | + | carbon source |
43861 | 15570 | D-alanine | + | carbon source |
43861 | 18333 | D-arabitol | + | carbon source |
43861 | 15824 | D-fructose | + | carbon source |
43861 | 12936 | D-galactose | + | carbon source |
43861 | 18024 | D-galacturonic acid | + | carbon source |
43861 | 17784 | D-glucosaminic acid | + | carbon source |
43861 | 24996 | lactate | + | carbon source |
43861 | 17113 | erythritol | + | carbon source |
43861 | 15740 | formate | + | carbon source |
43861 | 16865 | gamma-aminobutyric acid | + | carbon source |
43861 | 16724 | 4-hydroxybutyrate | + | carbon source |
43861 | 17754 | glycerol | + | carbon source |
43861 | 73804 | glycyl L-aspartic acid | + | carbon source |
43861 | 21217 | L-alaninamide | + | carbon source |
43861 | 73786 | L-alanylglycine | + | carbon source |
43861 | 30849 | L-arabinose | + | carbon source |
43861 | 17196 | L-asparagine | + | carbon source |
43861 | 18287 | L-fucose | + | carbon source |
43861 | 29985 | L-glutamate | + | carbon source |
43861 | 15603 | L-leucine | + | carbon source |
43861 | 17203 | L-proline | + | carbon source |
43861 | 18183 | L-pyroglutamic acid | + | carbon source |
43861 | 17115 | L-serine | + | carbon source |
43861 | 28053 | melibiose | + | carbon source |
43861 | 51850 | methyl pyruvate | + | carbon source |
43861 | 17272 | propionate | + | carbon source |
43861 | 143136 | succinamate | + | carbon source |
43861 | 30031 | succinate | + | carbon source |
43861 | 17151 | xylitol | + | carbon source |
43861 | 4853 | esculin | + | degradation |
43861 | 5291 | gelatin | + | degradation |
43861 | 28017 | starch | + | degradation |
43861 | 53426 | tween 80 | + | degradation |
43861 | 17634 | D-glucose | + | fermentation |
43861 | 17128 | adipate | +/- | assimilation |
43861 | 17634 | D-glucose | +/- | assimilation |
43861 | 17306 | maltose | +/- | assimilation |
43861 | 32032 | potassium gluconate | +/- | assimilation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | group ID |
---|---|---|---|---|---|---|
43861 | 3542 | cephalothin | yes | yes | 30 µg (disc) | |
43861 | 474053 | cefazolin | yes | yes | 30 µg (disc) | |
43861 | 3547 | cephradine | yes | yes | 30 µg (disc) | |
43861 | 29007 | ceftriaxone | yes | yes | 30 µg (disc) | |
43861 | 2637 | amikacin | yes | yes | 30 µg (disc) | |
43861 | 17833 | gentamicin | yes | yes | 10 µg (disc) | |
43861 | 6104 | kanamycin | yes | yes | 30 µg (disc) | |
43861 | 7507 | neomycin | yes | yes | 30 µg (disc) | |
43861 | 27902 | tetracycline | yes | yes | 30 µg (disc) | |
43861 | 50694 | minocycline | yes | yes | 30 µg (disc) | |
43861 | 48923 | erythromycin | yes | yes | 15 µg (disc) | |
43861 | 100246 | norfloxacin | yes | yes | 10 µg (disc) | |
43861 | 7731 | ofloxacin | yes | yes | 5 µg (disc) | |
43861 | 100241 | ciprofloxacin | yes | yes | 5 µg (disc) | |
43861 | 28001 | vancomycin | yes | yes | 30 µg (disc) | |
43861 | 8309 | polymyxin b | yes | yes | 300 Unit (disc) | |
43861 | 45924 | trimethoprim | yes | yes | 23.75 µg (disc) | 26 |
43861 | 9332 | sulfamethoxazole | yes | yes | 23.75 µg (disc) | 26 |
43861 | 17076 | streptomycin | yes | yes | 25 µg (disc) | |
43861 | 17698 | chloramphenicol | yes | yes | 30 µg (disc) |
metabolite production
- @ref: 43861
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
43861 | catalase | + | 1.11.1.6 |
43861 | cytochrome oxidase | + | 1.9.3.1 |
43861 | leucine arylamidase | + | 3.4.11.1 |
43861 | alpha-chymotrypsin | + | 3.4.21.1 |
43861 | cystine arylamidase | + | 3.4.11.3 |
43861 | alpha-glucosidase | + | 3.2.1.20 |
43861 | esterase (C 4) | + | |
43861 | esterase Lipase (C 8) | + | |
43861 | valine arylamidase | +/- | |
43861 | acid phosphatase | +/- | 3.1.3.2 |
43861 | naphthol-AS-BI-phosphohydrolase | +/- | |
43861 | alkaline phosphatase | +/- | 3.1.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture duration | enrichment culture temperature |
---|---|---|---|---|---|---|---|---|
43861 | air at the foot of Xiangshan Mountain, Beijing, China | Xiangshan Mountain, Beijing | China | CHN | Asia | Tryptic soy agar | 2 days | 30 |
67771 | From air at the foot of Xiangshan Mountain | Beijing | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
- Cat3: #Outdoor Air
taxonmaps
- @ref: 69479
- File name: preview.99_15078.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1674;97_7440;98_11405;99_15078&stattab=map
- Last taxonomy: Paracoccus
- 16S sequence: KX664462
- Sequence Identity:
- Total samples: 11275
- soil counts: 1174
- aquatic counts: 1808
- animal counts: 7284
- plant counts: 1009
Sequence information
16S sequences
- @ref: 43861
- description: 16S rRNA gene sequence
- accession: KX664462
- database: nuccore
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paracoccus aerius KCTC 42845 | GCA_016757275 | contig | ncbi | 1915382 |
66792 | Paracoccus aerius KCTC 42845 | GCA_014656455 | scaffold | ncbi | 1915382 |
66792 | Paracoccus aerius strain KCTC 42845 | 1915382.3 | wgs | patric | 1915382 |
66792 | Paracoccus sp. KCTC 42845 | 2803913.3 | wgs | patric | 1915382 |
GC content
- @ref: 43861
- GC-content: 63.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 91.02 | no |
gram-positive | no | 98.28 | yes |
anaerobic | no | 97.668 | yes |
aerobic | yes | 92.872 | no |
halophile | no | 88.116 | no |
spore-forming | no | 96.887 | no |
thermophile | no | 97.746 | yes |
glucose-util | yes | 94.02 | no |
motile | no | 54.625 | yes |
glucose-ferment | no | 78.903 | yes |
External links
@ref: 43861
culture collection no.: CFCC 14285, KCTC 42845
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 28758621 | Paracoccus aerius sp. nov., isolated from air. | Xue H, Piao CG, Guo MW, Wang LF, Li Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001976 | 2017 | *Air Microbiology, Bacterial Typing Techniques, Base Composition, Beijing, DNA, Bacterial/genetics, Fatty Acids/chemistry, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 33388938 | Paracoccus lichenicola sp. nov., Isolated from Lichen. | Lang L, An DF, Jiang LQ, Li GD, Wang LS, Wang XY, Li QY, Jiang CL, Jiang Y | Curr Microbiol | 10.1007/s00284-020-02321-8 | 2021 | Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids, *Lichens, *Paracoccus/genetics, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 36129740 | Paracoccus everestensis sp. nov., a novel bacterium with great antioxidant capacity isolated from the north slope of Mount Everest. | Cui X, Liu Y, Xu Y, Chen T, Zhang S, Wang J, Yang R, Liu G, Zhang W, Zhang G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005562 | 2022 | *Antioxidants, Bacterial Typing Techniques, Base Composition, Cardiolipins, Catalase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Nucleotides, *Paracoccus, Phosphatidylcholines, Phosphatidylethanolamines, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2 | Transcriptome |
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
43861 | Han Xue, Chun-gen Piao, Min-wei Guo, Lai-fa Wang, Yong Li | Paracoccus aerius sp. nov., isolated from air | 10.1099/ijsem.0.001976 | IJSEM 67: 2586-2591 2017 | 28758621 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |