Name: Marinomonas epiphytica SAB-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140970

Type strain:

Species: Marinomonas epiphytica

Strain Designation: SAB-3

Culture col. no.: JCM 31365, KCTC 52293, MTCC 12569

Strain history: S. Krishnamurthi; MTCC, India; SAB-3.

NCBI tax ID(s): 1779332 (species)

Section

Marinomonas epiphytica SAB-3 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from surface of seaweed , collected from the intertidal region of the coastal waters of Anjuna beach, west coast of India, state of Goa.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinomonas*
	Species	**Marinomonas epiphytica**
	Full Scientific Name (LPSN)	Marinomonas epiphytica Ojha et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43862]	Gram stain	negative

[Ref.: #43862]	Cell length	1.0-1.2 µm

[Ref.: #43862]	Cell width	0.2-0.4 µm

[Ref.: #43862]	Cell shape	rod-shaped

[Ref.: #43862]	Motility	yes

[Ref.: #43862]	Colony color	ivory
[Ref.: #43862]	Colony shape	circular
[Ref.: #43862]	Incubation period	1 day
[Ref.: #43862]	Cultivation medium used	Marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43862]

Culture medium

Marine agar (MA)

[Ref.: #43862]

Culture medium growth

		Temperature
[Ref.: #43862]	optimum	25-30 °C
[Ref.: #43862]	growth	15-35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43862]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43862]			optimum	7
[Ref.: #43862]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43862]

Oxygen tolerance

aerobe

[Ref.: #43862]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43862]		NaCl		growth	0-6	%(w/v)
[Ref.: #43862]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43862]	(R)-lactate ChEBI	-	carbon source
[Ref.: #43862]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #43862]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #43862]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #43862]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #43862]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #43862]	5-oxoproline ChEBI	-	carbon source
[Ref.: #43862]	acetoacetate ChEBI	-	carbon source
[Ref.: #43862]	beta-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #43862]	bromosuccinate ChEBI	-	carbon source
[Ref.: #43862]	cellobiose ChEBI	-	carbon source
[Ref.: #43862]	D-arabitol ChEBI	-	carbon source
[Ref.: #43862]	D-aspartate ChEBI	-	carbon source
[Ref.: #43862]	D-fructose ChEBI	-	carbon source
[Ref.: #43862]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #43862]	D-fucose ChEBI	-	carbon source
[Ref.: #43862]	D-galactose ChEBI	-	carbon source
[Ref.: #43862]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #43862]	D-gluconate ChEBI	-	carbon source
[Ref.: #43862]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #43862]	D-glucuronate ChEBI	-	carbon source
[Ref.: #43862]	D-malate ChEBI	-	carbon source
[Ref.: #43862]	D-mannose ChEBI	-	carbon source
[Ref.: #43862]	D-serine ChEBI	-	carbon source
[Ref.: #43862]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43862]	formate ChEBI	-	carbon source
[Ref.: #43862]	galactarate ChEBI	-	carbon source
[Ref.: #43862]	gentiobiose ChEBI	-	carbon source
[Ref.: #43862]	glycerol ChEBI	-	carbon source
[Ref.: #43862]	inosine ChEBI	-	carbon source
[Ref.: #43862]	L-alanine ChEBI	-	carbon source
[Ref.: #43862]	L-arginine ChEBI	-	carbon source
[Ref.: #43862]	L-fucose ChEBI	-	carbon source
[Ref.: #43862]	L-galactonate ChEBI	-	carbon source
[Ref.: #43862]	L-histidine ChEBI	-	carbon source
[Ref.: #43862]	L-malate ChEBI	-	carbon source
[Ref.: #43862]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43862]	L-serine ChEBI	-	carbon source
[Ref.: #43862]	mannitol ChEBI	-	carbon source
[Ref.: #43862]	melibiose ChEBI	-	carbon source
[Ref.: #43862]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #43862]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #43862]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #43862]	myo-inositol ChEBI	-	carbon source
[Ref.: #43862]	N-acetyl-beta-D-mannosamine ChEBI	-	carbon source
[Ref.: #43862]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #43862]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43862]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #43862]	nitrate ChEBI	-	reduction
[Ref.: #43862]	pectin ChEBI	-	carbon source
[Ref.: #43862]	propionate ChEBI	-	carbon source
[Ref.: #43862]	quinate ChEBI	-	carbon source
[Ref.: #43862]	raffinose ChEBI	-	carbon source
[Ref.: #43862]	salicin ChEBI	-	carbon source
[Ref.: #43862]	sodium lactate ChEBI	-	carbon source
[Ref.: #43862]	stachyose ChEBI	-	carbon source
[Ref.: #43862]	starch ChEBI	-	hydrolysis
[Ref.: #43862]	sucrose ChEBI	-	carbon source
[Ref.: #43862]	trehalose ChEBI	-	carbon source
[Ref.: #43862]	turanose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43862]	amikacin ChEBI	yes	30	µg (disc)
[Ref.: #43862]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43862]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43862]	aztreonam ChEBI	yes
[Ref.: #43862]	cefoperazone ChEBI	yes	75	µg (disc)
[Ref.: #43862]	ceftazidime ChEBI	yes	30	µg (disc)
[Ref.: #43862]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43862]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43862]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43862]	cloxacillin ChEBI	yes	1	µg (disc)
[Ref.: #43862]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43862]	fusidate ChEBI	yes
[Ref.: #43862]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43862]	guanidinium chloride ChEBI	yes
[Ref.: #43862]	lithium chloride ChEBI	yes
[Ref.: #43862]	minocycline ChEBI	yes
[Ref.: #43862]	nalidixic acid ChEBI	yes	10	µg (disc)
[Ref.: #43862]	niaproof ChEBI	yes
[Ref.: #43862]	nitrofurantoin ChEBI	yes	300	µg (disc)
[Ref.: #43862]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43862]	penicillin ChEBI	yes	10	Unit (disc)
[Ref.: #43862]	sodium bromate ChEBI	yes
[Ref.: #43862]	sodium butyrate ChEBI	yes
[Ref.: #43862]	tetrazolium blue ChEBI	yes
[Ref.: #43862]	tetrazolium violet ChEBI	yes
[Ref.: #43862]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #43862]	troleandomycin ChEBI	yes
[Ref.: #43862]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic resistance	Concentration
[Ref.: #43862]		26	sulfamethoxazole ChEBI	yes	25	µg (disc)
[Ref.: #43862]		26	trimethoprim ChEBI	yes	25	µg (disc)

	Metabolite	Production
[Ref.: #43862]	acetoin ChEBI	no
[Ref.: #43862]	hydrogen sulfide ChEBI	no
[Ref.: #43862]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43862]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43862]	catalase	+	1.11.1.6
[Ref.: #43862]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43862]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43862]	ornithine decarboxylase	-	4.1.1.17

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43862]

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	47.6
C16:1ω7c / C16:1ω6c	19.7
C16:0	11.9
C10:0 3OH	7.3
C18:0	4.9
C10:0	2.5
C12:0	2.5
C20:1ω7c	0.5
C14:0	0.5
C12:1 3OH	0.2
C12:0 3OH	0.2
C17:0 anteiso	0.2
C16:0 anteiso	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43862]	Sample type/isolated from	surface of seaweed (Dictyota sp.), collected from the intertidal region of the coastal waters of Anjuna beach, west coast of India, state of Goa
[Ref.: #43862]	Geographic location (country and/or sea, region)	Anjuna beach, state of Goa, west coast of India
[Ref.: #43862]	Country	India
[Ref.: #43862]	Country ISO 3 Code	IND
[Ref.: #43862]	Continent	Asia
[Ref.: #43862]	Geographic location	15.5788°/73.7384°
[Ref.: #43862]	Enrichment culture	Zobell marine agar plates
[Ref.: #43862]	Enrichment culture duration	2-4 weeks
[Ref.: #43862]	Enrichment culture temperature	30 ̊C

[Ref.: #67770]	Sample type/isolated from	Brown macro algae (Dictyota sp.) growing in the Arabian sea
[Ref.: #67770]	Host species	Dictyota sp.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Goa
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Host	#Algae	#Brown Algae

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43862]	16S rRNA gene sequence	LN999519		GenBank

[Ref.: #43862]	GC-content	41 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	41 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43862]

Culture collection no.

JCM 31365, KCTC 52293, MTCC 12569

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga.	Ojha AK, Verma A, Pal Y, Bhatt D, Mayilraj S, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002014	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43862

Anup Kumar Ojha, Ashish Verma, Yash Pal, Deepak Bhatt, Shanmugam Mayilraj, Srinivasan Krishnamurthi: Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga. IJSEM 67: 2746 - 2751 2017 ( DOI 10.1099/ijsem.0.002014 , PubMed 28771118 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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