Name: Saccharibacillus deserti WLJ055
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140934

Type strain:

Species: Saccharibacillus deserti

Strain Designation: WLJ055

Culture col. no.: CGMCC 1.15276, KCTC 33693

Strain history: <- Sun, Ji-Quan, Peking Univ.

NCBI tax ID(s): 1634444 (species)

Section

Saccharibacillus deserti WLJ055 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from Top layer of soil collected from the Kubuqi desert.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Saccharibacillus*
	Species	**Saccharibacillus deserti**
	Full Scientific Name (LPSN)	Saccharibacillus deserti Sun et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43816]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43816]	Cell length	0.8-1.4 µm

[Ref.: #43816]	Cell width	0.4-0.5 µm

[Ref.: #43816]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43816]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.575

[Ref.: #43816]	Flagellum arrangement	polar
[Ref.: #67771]	Flagellum arrangement	subpolar

[Ref.: #43816]	Colony size	2-3 mm
[Ref.: #43816]	Colony color	Pale pink
[Ref.: #43816]	Colony shape	circular
[Ref.: #43816]	Incubation period	2 days
[Ref.: #43816]	Cultivation medium used	Luria Bertani agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43816]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43816]

Culture medium growth

		Temperature
[Ref.: #43816]	growth	10-35 °C
[Ref.: #43816]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #43816]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43816]			optimum	6
[Ref.: #43816]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43816]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43816]	Spore description	Formed in a terminal position
[Ref.: #43816]	Type of spore	spore
[Ref.: #43816]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.447

[Ref.: #43816]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43816]		NaCl		growth	0-4	%(w/v)
[Ref.: #43816]		NaCl		optimum	0-1	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43816]	2-oxoglutarate ChEBI	-	assimilation
[Ref.: #43816]	alpha-lactose ChEBI	+	assimilation
[Ref.: #43816]	citrate ChEBI	-	assimilation
[Ref.: #43816]	D-fructose ChEBI	+	assimilation
[Ref.: #43816]	D-galactose ChEBI	+	assimilation
[Ref.: #43816]	D-glucose ChEBI	+	assimilation
[Ref.: #43816]	D-mannitol ChEBI	+	assimilation
[Ref.: #43816]	D-mannose ChEBI	-	assimilation
[Ref.: #43816]	D-sorbitol ChEBI	+	assimilation
[Ref.: #43816]	D-xylose ChEBI	+	assimilation
[Ref.: #43816]	decanoate ChEBI	-	assimilation
[Ref.: #43816]	esculin ChEBI	+	hydrolysis
[Ref.: #43816]	ethanol ChEBI	-	assimilation
[Ref.: #43816]	gelatin ChEBI	-	hydrolysis
[Ref.: #43816]	glucose ChEBI	-	fermentation
[Ref.: #43816]	glucose ChEBI	+	fermentation
[Ref.: #43816]	glutamate ChEBI	-	assimilation
[Ref.: #43816]	L-arabinose ChEBI	+	assimilation
[Ref.: #43816]	L-arginine ChEBI	-	assimilation
[Ref.: #43816]	L-glutamate ChEBI	-	assimilation
[Ref.: #43816]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43816]	L-tartrate ChEBI	-	assimilation
[Ref.: #43816]	malate ChEBI	-	assimilation
[Ref.: #43816]	maltose ChEBI	-	assimilation
[Ref.: #43816]	methanol ChEBI	-	assimilation
[Ref.: #43816]	myo-inositol ChEBI	+	assimilation
[Ref.: #43816]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43816]	nitrate ChEBI	-	reduction
[Ref.: #43816]	phenylacetate ChEBI	-	assimilation
[Ref.: #43816]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43816]	propionate ChEBI	-	assimilation
[Ref.: #43816]	raffinose ChEBI	+	assimilation
[Ref.: #43816]	sodium citrate ChEBI	-	assimilation
[Ref.: #43816]	succinate ChEBI	-	assimilation
[Ref.: #43816]	sucrose ChEBI	+	assimilation
[Ref.: #43816]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43816]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43816]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43816]	bacitracin ChEBI				yes	0.04	Unit (disc)
[Ref.: #43816]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43816]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #43816]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43816]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43816]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43816]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43816]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #43816]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #43816]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #43816]	polymyxin ChEBI	yes	300	Unit (disc)
[Ref.: #43816]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43816]	roxithromycin ChEBI	yes	15	µg (disc)
[Ref.: #43816]	spectinomycin ChEBI	yes	100	µg (disc)
[Ref.: #43816]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43816]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43816]	trimethoprim ChEBI	yes	5	µg (disc)
[Ref.: #43816]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43816]		acetoin ChEBI	no
[Ref.: #43816]		indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43816]		acetoin ChEBI	-
[Ref.: #43816]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43816]	acid phosphatase	-	3.1.3.2
[Ref.: #43816]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43816]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43816]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43816]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43816]	beta-galactosidase	+	3.2.1.23
[Ref.: #43816]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43816]	catalase	+	1.11.1.6
[Ref.: #43816]	cystine arylamidase	-	3.4.11.3
[Ref.: #43816]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43816]	leucine arylamidase	-	3.4.11.1
[Ref.: #43816]	lipase (C 14)	-
[Ref.: #43816]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43816]	trypsin	-	3.4.21.4
[Ref.: #43816]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43816]	Sample type/isolated from	Top layer of soil (0-15 cm) collected from the Kubuqi desert
[Ref.: #43816]	Geographic location (country and/or sea, region)	Ordos, Inner Mongolia
[Ref.: #43816]	Country	China
[Ref.: #43816]	Country ISO 3 Code	CHN
[Ref.: #43816]	Continent	Asia
[Ref.: #43816]	Geographic location	40.3000°/109.4660°

[Ref.: #67771]	Sample type/isolated from	From a top layer of desert soil from Erdos
[Ref.: #67771]	Geographic location (country and/or sea, region)	Inner Mongolia, northern China
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP191067 (>99% sequence identity) for Saccharibacillus from Microbeatlas

Aquatic Samples	177
Soil Samples	77
Animal Samples	522
Plant Samples	59
Total Samples	835

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43816]	16S rRNA gene sequence	KP191067		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharibacillus deserti WLJ055	GCA_013618475	contig	GenBank	1634444 tax ID	*
[Ref.: #66792]	Saccharibacillus deserti KCTC 33693	GCA_013185225	contig	GenBank	1634444 tax ID	*
[Ref.: #66792]	Saccharibacillus deserti strain KCTC 33693	1634444.3	wgs	PATRIC	1634444 tax ID	*
[Ref.: #66792]	Saccharibacillus deserti KCTC 33693	2910450206	draft	JGI IMG/M	1634444 tax ID	*
[Ref.: #66792]	Saccharibacillus deserti WLJ055	2910436485	draft	JGI IMG/M	1634444 tax ID	*

[Ref.: #43816]	GC-content	55.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	55.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharibacillus deserti strain KCTC 33693 PATRIC: 1634444.4
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharibacillus deserti strain KCTC 33693 PATRIC: 1634444.3
[Ref.: #69480]	motile	yes	89.652	yes
[Ref.: #69480]	gram-positive	yes	91.631	yes
[Ref.: #69480]	anaerobic	no	98.387	no
[Ref.: #69480]	aerobic	yes	79.687	no
[Ref.: #69480]	halophile	no	88.189	yes
[Ref.: #69480]	spore-forming	yes	93.013	no
[Ref.: #69480]	glucose-util	yes	90.533	no
[Ref.: #69480]	flagellated	yes	86.098	yes
[Ref.: #69480]	thermophile	no	99.825	no
[Ref.: #69480]	glucose-ferment	no	68.578	no

Availability in culture collections External links

[Ref.: #43816]

Culture collection no.

CGMCC 1.15276, KCTC 33693

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharibacillus qingshengii sp. nov., isolated from a lead-cadmium tailing.	Han H, Gao S, Wang Q, He LY, Sheng XF	Int J Syst Evol Microbiol	10.1099/ijsem.0.001404	2016	*
Phylogeny	Saccharibacillus deserti sp. nov., isolated from desert soil.	Sun JQ, Wang XY, Wang LJ, Xu L, Liu M, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.000766	2015	*
Phylogeny	Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds.	Jiang L, Lim CJ, Kim SG, Jeong JC, Kim CY, Kim DH, Kim SW, Lee J	J Microbiol	10.1007/s12275-020-9346-6	2019	*
Phylogeny	Isolation of Saccharibacillus WB17 strain from wheat bran phyllosphere and genomic insight into the cellulolytic and hemicellulolytic complex of the Saccharibacillus genus.	Besaury L, Bocquart M, Remond C	Braz J Microbiol	10.1007/s42770-022-00819-w	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43816

Ji-Quan Sun, Xin-Ying Wang, Li-Juan Wang, Lian Xu, Min Liu, Xiao-Lei Wu: Saccharibacillus deserti sp. nov., isolated from desert soil. IJSEM 66: 623 - 627 2016 ( DOI 10.1099/ijsem.0.000766 , PubMed 26559492 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Saccharibacillus deserti strain KCTC 33693

Saccharibacillus deserti strain KCTC 33693

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