Name: Saccharothrix stipae D34
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140935

Type strain:

Species: Saccharothrix stipae

Strain Designation: D34

Culture col. no.: JCM 30560, ACCC 19714

Strain history: Y. Lin; Northwest A&F Univ., China; D34 (=CCNWNX0220).

NCBI tax ID(s): 1049182 (species)

Section

Saccharothrix stipae D34 is an aerobe, spore-forming bacterium that was isolated from A soil sample collected from the rhizosphere of Stipa grandis at Yunwu Mountain.

spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharothrix*
	Species	**Saccharothrix stipae**
	Full Scientific Name (LPSN)	Saccharothrix stipae Lin et al. 2016

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Bennett's glucose asparagine agar

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Culture medium growth

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Culture medium

Czapeck's agar media

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Culture medium growth

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Culture medium

Gause's synthetic agar

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Culture medium growth

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

ISP 1

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

		Temperature
[Ref.: #43817]	growth	28-45 °C
[Ref.: #43817]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #43817]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43817]			optimum	7.5
[Ref.: #43817]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43817]

Oxygen tolerance

aerobe

[Ref.: #43817]	Spore description	Spherical to oval in shape with verrucose surfaces
[Ref.: #43817]	Type of spore	spore
[Ref.: #43817]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43817]		NaCl		growth	0-6	%(w/v)
[Ref.: #43817]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43817]	adenine ChEBI	+	nitrogen source
[Ref.: #43817]	alanine ChEBI	+	nitrogen source
[Ref.: #43817]	cellulose ChEBI	+	hydrolysis
[Ref.: #43817]	D-xylose ChEBI	-	carbon source
[Ref.: #43817]	gelatin ChEBI	-	hydrolysis
[Ref.: #43817]	histidine ChEBI	+	nitrogen source
[Ref.: #43817]	L-arabinose ChEBI	+	carbon source
[Ref.: #43817]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43817]	L-threonine ChEBI	+	nitrogen source
[Ref.: #43817]	lactose ChEBI	-	carbon source
[Ref.: #43817]	leucine ChEBI	+	nitrogen source
[Ref.: #43817]	myo-inositol ChEBI	+	carbon source
[Ref.: #43817]	nitrate ChEBI	-	reduction
[Ref.: #43817]	raffinose ChEBI	+	carbon source
[Ref.: #43817]	starch ChEBI	+	carbon source
[Ref.: #43817]	starch ChEBI	+	hydrolysis
[Ref.: #43817]	tyrosine ChEBI	-	nitrogen source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43817]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43817]	catalase	+	1.11.1.6
[Ref.: #43817]	cellulase	+	3.2.1.4
[Ref.: #43817]	cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43817]	Sample type/isolated from	A soil sample collected from the rhizosphere of Stipa grandis at Yunwu Mountain
[Ref.: #43817]	Geographic location (country and/or sea, region)	Ningxia
[Ref.: #43817]	Country	China
[Ref.: #43817]	Country ISO 3 Code	CHN
[Ref.: #43817]	Continent	Asia
[Ref.: #43817]	Geographic location	36.2670°/106.3990°

[Ref.: #67770]	Sample type/isolated from	Soil from the rhizosphere of Stipa grandis at Yunwu Mountain
[Ref.: #67770]	Host species	Stipa grandis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ningxia, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

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Global distribution of 16S sequence JN002085 (>99% sequence identity) for Saccharothrix from Microbeatlas

Aquatic Samples	8
Soil Samples	112
Animal Samples	13
Plant Samples	8
Total Samples	141

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43817]	16S rRNA gene sequence	JN002085		GenBank

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GC-content

74.1 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43817]

Culture collection no.

JCM 30560, ACCC 19714

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharothrix stipae sp. nov., an actinomycete isolated from the rhizosphere of Stipa grandis.	Bing Lin Y, Qing Guo Y, Hui Di X, Chun Fan M, Hong Dong D, Hong Wei G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000827	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43817

Yan Bing Lin, Yan Qing Guo, Xiao Hui Di, Miao Chun Fan, Dan Hong Dong, Ge Hong Wei: Saccharothrix stipae sp. nov., an actinomycete isolated from the rhizosphere of Stipa grandis. IJSEM 66: 1017 - 1021 2016 ( DOI 10.1099/ijsem.0.000827 , PubMed 26674086 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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