Paenibacillus radicis (CGMCC 1.15286, DSM 100762, 694)

Name: Paenibacillus radicis (CGMCC 1.15286, DSM 100762, 694)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140933

Type strain

Strain Designation 694

Culture col. no. CGMCC 1.15286 DSM 100762 694

NCBI tax ID(s) 1737354

Special Collections DSMZ JCM Literature strains

History <- J. Gao, Beijing Agro-Biotechnology Research Center; 694

Links

Paenibacillus radicis 694 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from Surface-sterilized root tissue of maize planted in Fangshan District of Beijing.

spore-forming Gram-positive motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400113

DSM 100762

@ref 20215

Last LPSN update 2026-02-09 11:33:45

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus radicis

Full scientific name Paenibacillus radicis Gao et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
43813	positive	3.8-4.4 µm	0.8-1.3 µm	rod-shaped		peritrichous

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43813	0.5-1 mm	Milky, glossy	circular	3 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43813	Reasoner's 2A agar (R2A)
67652	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
43813	positive	growth	10-45
43813	positive	optimum	30
67652	positive	growth	30

Culture pH

@ref	Ability	Type	PH
43813	positive	optimum	7
43813	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43813	aerobe
125439	obligate aerobe	90.4

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
43813	Ellipsoidal in a subterminal position	endospore
125438				93.137

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43813	NaCl	positive	growth	0-3 %(w/v)
43813	NaCl	positive	optimum	1 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43813		1 % sodium lactate	+	growth
43813	30089 ChEBI	acetate	-	growth
43813	13705 ChEBI	acetoacetate	-	growth
43813	17128 ChEBI	adipate	-	assimilation
43813	17925 ChEBI	alpha-D-glucose	-	growth
43813	36219 ChEBI	alpha-lactose	+	growth
43813	27613 ChEBI	amygdalin	+	builds acid from
43813	18305 ChEBI	arbutin	+	builds acid from
43813		casein	-	hydrolysis
43813	17057 ChEBI	cellobiose	+	builds acid from
43813	17057 ChEBI	cellobiose	+	growth
43813	15824 ChEBI	D-fructose	-	growth
43813	15824 ChEBI	D-fructose	+	builds acid from
43813	78697 ChEBI	D-fructose 6-phosphate	+	growth
43813	12936 ChEBI	D-galactose	+	builds acid from
43813	12936 ChEBI	D-galactose	+	growth
43813	17634 ChEBI	D-glucose	+	builds acid from
43813	14314 ChEBI	D-glucose 6-phosphate	+	growth
43813	62318 ChEBI	D-lyxose	+	builds acid from
43813	16899 ChEBI	D-mannitol	+	assimilation
43813	16899 ChEBI	D-mannitol	+	builds acid from
43813	16899 ChEBI	D-mannitol	+	growth
43813	16024 ChEBI	D-mannose	+	assimilation
43813	16024 ChEBI	D-mannose	+	builds acid from
43813	16024 ChEBI	D-mannose	+	growth
43813	65327 ChEBI	D-xylose	+	builds acid from
43813	27689 ChEBI	decanoate	-	assimilation
43813	4853 ChEBI	esculin	+	hydrolysis
43813		esculin ferric citrate	+	builds acid from
43813	5291 ChEBI	gelatin	-	hydrolysis
43813	28066 ChEBI	gentiobiose	+	builds acid from
43813	28066 ChEBI	gentiobiose	+	growth
43813	17234 ChEBI	glucose	-	assimilation
43813	17234 ChEBI	glucose	-	fermentation
43813	28087 ChEBI	glycogen	-	builds acid from
43813	30849 ChEBI	L-arabinose	+	assimilation
43813	29991 ChEBI	L-aspartate	-	growth
43813	18287 ChEBI	L-fucose	+	growth
43813	17716 ChEBI	lactose	+	builds acid from
43813	25115 ChEBI	malate	-	assimilation
43813	25115 ChEBI	malate	+	growth
43813	17306 ChEBI	maltose	+	assimilation
43813	17306 ChEBI	maltose	+	builds acid from
43813	6731 ChEBI	melezitose	+/-	builds acid from
43813	28053 ChEBI	melibiose	+	builds acid from
43813	28053 ChEBI	melibiose	+	growth
43813	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43813	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
43813	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from
43813	37657 ChEBI	methyl D-glucoside	+	growth
43813	506227 ChEBI	N-acetylglucosamine	+	assimilation
43813	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43813	506227 ChEBI	N-acetylglucosamine	+	growth
43813	100147 ChEBI	nalidixic acid	-	growth
43813	17632 ChEBI	nitrate	-	respiration
43813	17309 ChEBI	pectin	-	growth
43813	18401 ChEBI	phenylacetate	-	assimilation
43813	32032 ChEBI	potassium gluconate	-	assimilation
43813	75248 ChEBI	potassium tellurite	+	growth
43813	16634 ChEBI	raffinose	+	builds acid from
43813	16634 ChEBI	raffinose	+	growth
43813	17814 ChEBI	salicin	+	builds acid from
43813	17814 ChEBI	salicin	+	growth
43813	64103 ChEBI	sodium butyrate	-	growth
43813	53258 ChEBI	sodium citrate	-	assimilation
43813	17164 ChEBI	stachyose	+	growth
43813	28017 ChEBI	starch	-	builds acid from
43813	28017 ChEBI	starch	-	hydrolysis
43813	17992 ChEBI	sucrose	+	builds acid from
43813	17992 ChEBI	sucrose	+	growth
43813	75193 ChEBI	tetrazolium violet	+	growth
43813	27082 ChEBI	trehalose	+	builds acid from
43813	27082 ChEBI	trehalose	+	growth
43813	32528 ChEBI	turanose	+	builds acid from
43813	32528 ChEBI	turanose	+	growth

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43813	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43813	acid phosphatase	+	3.1.3.2
43813	alkaline phosphatase	+	3.1.3.1
43813	alpha-chymotrypsin	-	3.4.21.1
43813	alpha-fucosidase	-	3.2.1.51
43813	alpha-galactosidase	-	3.2.1.22
43813	alpha-glucosidase	-	3.2.1.20
43813	alpha-mannosidase	-	3.2.1.24
43813	arginine dihydrolase	-	3.5.3.6
43813	beta-galactosidase	+	3.2.1.23
43813	beta-glucosidase	-	3.2.1.21
43813	beta-glucuronidase	-	3.2.1.31
43813	catalase	+	1.11.1.6
43813	cystine arylamidase	-	3.4.11.3
43813	cytochrome oxidase	+	1.9.3.1
43813	esterase (C 4)	-
43813	esterase Lipase (C 8)	+
43813	leucine arylamidase	+	3.4.11.1
43813	lipase (C 14)	+
43813	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43813	naphthol-AS-BI-phosphohydrolase	+
43813	trypsin	+	3.4.21.4
43813	urease	-	3.5.1.5
43813	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43813	Surface-sterilized root tissue of maize planted in Fangshan District of Beijing	Beijing	China	CHN	Asia
67652	surface-sterilized root tissue of maize	Beijing, Fangshan District	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KR610523 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	18
Soil Samples	276
Animal Samples	68
Plant Samples	93
Total Samples	455

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
67652	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464155v1 assembly for Paenibacillus radicis (ex Gao et al. 2016) CGMCC 1.15286	scaffold	GCA_014641555	1737354.3	2996659780	1737354	58.8

16S sequences

@ref	Description	Accession	Database
43813	Paenibacillus radicis (ex Gao et al. 2016) strain 694 16S ribosomal RNA gene, partial sequence	KR610523

GC content

@ref	GC-content (mol%)	Method
67652	46.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus radicis CGMCC 1.15286
NCBI: GCA_014641555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.90	no
125439	motility	BacteriaNetⓘ	yes	83.50	no
125439	gram_stain	BacteriaNetⓘ	variable	81.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus radicis CGMCC 1.15286
NCBI: GCA_014641555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	61.11	yes
125438	anaerobic	anaerobicⓘ	no	95.87	no
125438	aerobic	aerobicⓘ	yes	72.73	no
125438	spore-forming	spore-formingⓘ	yes	93.14	yes
125438	thermophilic	thermophileⓘ	no	92.80	yes
125438	flagellated	motile2+ⓘ	yes	85.86	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus radicis sp. nov., an endophytic bacterium isolated from maize root.	Gao JL, Yuan M, Wang XM, Qiu TL, Lv FY, Yang MM, Sun JG	Int J Syst Evol Microbiol	10.1099/ijsem.0.000795	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43813	Jun-Lian Gao, Mei Yuan, Xu-Ming Wang, Tian-Lei Qiu, Fan-Yang Lv, Ming-Ming Yang, Jian-Guang Sun: Paenibacillus radicis sp. nov., an endophytic bacterium isolated from maize root. IJSEM 66: 807 - 811 2016 ( DOI 10.1099/ijsem.0.000795 , PubMed 26612690 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67652	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100762
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Paenibacillus radicis (CGMCC 1.15286, DSM 100762, 694)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014641555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media