Name: Luteimonas notoginsengisoli SYP-B804
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140925

Type strain:

Species: Luteimonas notoginsengisoli

Strain Designation: SYP-B804

Culture col. no.: KCTC 42211, JCM 30329

Strain history: Y.-X. Zhang; Shenyang Pharm. Univ., China; SYP-B804.

NCBI tax ID(s): 1578200 (species)

Special Collections

Section

Luteimonas notoginsengisoli SYP-B804 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Rhizosphere of Panax notoginseng.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Luteimonas*
	Species	**Luteimonas notoginsengisoli**
	Full Scientific Name (LPSN)	Luteimonas notoginsengisoli Cheng et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43797]	Gram stain	negative

[Ref.: #43797]	Cell length	0.9-1.9 µm

[Ref.: #43797]	Cell width	0.3-0.4 µm

[Ref.: #43797]	Cell shape	rod-shaped

[Ref.: #43797]	Motility	yes

[Ref.: #43797]	Flagellum arrangement	monotrichous, polar

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #43797]	growth	15-40 °C
[Ref.: #43797]	optimum	28-32 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #43797]			optimum	7-8
[Ref.: #43797]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43797]		NaCl		growth	0-2	%(w/v)
[Ref.: #43797]		NaCl		optimum	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43797]	2-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43797]	2-oxobutanoate ChEBI	-	assimilation
[Ref.: #43797]	2-oxoglutarate ChEBI	+/-	assimilation
[Ref.: #43797]	3-O-methyl-D-glucose ChEBI	-	assimilation
[Ref.: #43797]	4-hydroxyphenylacetic acid ChEBI	-	assimilation
[Ref.: #43797]	acetate ChEBI	+	assimilation
[Ref.: #43797]	acetoacetate ChEBI	+	assimilation
[Ref.: #43797]	adipate ChEBI	-	assimilation
[Ref.: #43797]	alpha-D-glucose ChEBI	-	assimilation
[Ref.: #43797]	alpha-lactose ChEBI	-	assimilation
[Ref.: #43797]	beta-hydroxybutyrate ChEBI	+/-	assimilation
[Ref.: #43797]	bromosuccinate ChEBI	-	assimilation
[Ref.: #43797]	cellobiose ChEBI	-	assimilation
[Ref.: #43797]	cellulose ChEBI	-	hydrolysis
[Ref.: #43797]	citrate ChEBI	-	assimilation
[Ref.: #43797]	D-arabitol ChEBI	-	assimilation
[Ref.: #43797]	D-aspartate ChEBI	-	assimilation
[Ref.: #43797]	D-fructose ChEBI	+	assimilation
[Ref.: #43797]	D-fructose 6-phosphate ChEBI	+	assimilation
[Ref.: #43797]	D-fucose ChEBI	+/-	assimilation
[Ref.: #43797]	D-galactose ChEBI	-	assimilation
[Ref.: #43797]	D-galacturonic acid ChEBI	+	assimilation
[Ref.: #43797]	D-gluconate ChEBI	+/-	assimilation
[Ref.: #43797]	D-glucose 6-phosphate ChEBI	+	assimilation
[Ref.: #43797]	D-glucuronate ChEBI	+/-	assimilation
[Ref.: #43797]	D-mannitol ChEBI	-	assimilation
[Ref.: #43797]	D-mannose ChEBI	+/-	assimilation
[Ref.: #43797]	D-serine ChEBI	-	assimilation
[Ref.: #43797]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43797]	dextrin ChEBI	+	assimilation
[Ref.: #43797]	esculin ChEBI	-	assimilation
[Ref.: #43797]	formate ChEBI	-	assimilation
[Ref.: #43797]	gamma-aminobutyric acid ChEBI	-	assimilation
[Ref.: #43797]	gelatin ChEBI	+	assimilation
[Ref.: #43797]	gelatin ChEBI	+	hydrolysis
[Ref.: #43797]	gentiobiose ChEBI	+	assimilation
[Ref.: #43797]	gluconate ChEBI	-	assimilation
[Ref.: #43797]	glucuronamide ChEBI	+	assimilation
[Ref.: #43797]	glycerol ChEBI	-	assimilation
[Ref.: #43797]	glycine-proline ChEBI	+	assimilation
[Ref.: #43797]	inosine ChEBI	-	assimilation
[Ref.: #43797]	L-alanine ChEBI	-	assimilation
[Ref.: #43797]	L-arginine ChEBI	+/-	assimilation
[Ref.: #43797]	L-aspartate ChEBI	+	assimilation
[Ref.: #43797]	L-fucose ChEBI	+/-	assimilation
[Ref.: #43797]	L-galactonic acid gamma-lactone ChEBI	+	assimilation
[Ref.: #43797]	L-glutamate ChEBI	+	assimilation
[Ref.: #43797]	L-histidine ChEBI	-	assimilation
[Ref.: #43797]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43797]	L-serine ChEBI	+	assimilation
[Ref.: #43797]	malate ChEBI	-	assimilation
[Ref.: #43797]	maltose ChEBI	-	assimilation
[Ref.: #43797]	melibiose ChEBI	-	assimilation
[Ref.: #43797]	methyl D-glucoside ChEBI	-	assimilation
[Ref.: #43797]	methyl pyruvate ChEBI	-	assimilation
[Ref.: #43797]	myo-inositol ChEBI	-	assimilation
[Ref.: #43797]	N-acetyl-beta-D-mannosamine ChEBI	+/-	assimilation
[Ref.: #43797]	N-acetylgalactosamine ChEBI	-	assimilation
[Ref.: #43797]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43797]	n-acetylneuraminate ChEBI	-	assimilation
[Ref.: #43797]	nitrate ChEBI	-	reduction
[Ref.: #43797]	pectin ChEBI	+	assimilation
[Ref.: #43797]	propionate ChEBI	+	assimilation
[Ref.: #43797]	raffinose ChEBI	-	assimilation
[Ref.: #43797]	salicin ChEBI	-	assimilation
[Ref.: #43797]	stachyose ChEBI	-	assimilation
[Ref.: #43797]	starch ChEBI	-	hydrolysis
[Ref.: #43797]	sucrose ChEBI	-	assimilation
[Ref.: #43797]	trehalose ChEBI	-	assimilation
[Ref.: #43797]	turanose ChEBI	-	assimilation
[Ref.: #43797]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43797]	tween 40 ChEBI	+	assimilation
[Ref.: #43797]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43797]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43797]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43797]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43797]	aztreonam ChEBI		yes
[Ref.: #43797]	d-serine ChEBI	yes
[Ref.: #43797]	fusidate ChEBI	yes
[Ref.: #43797]	guanidinium chloride ChEBI	yes
[Ref.: #43797]	nalidixic acid ChEBI		yes
[Ref.: #43797]	vancomycin ChEBI	yes

	Metabolite production	Metabolite	Production
[Ref.: #43797]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43797]	acid phosphatase	+	3.1.3.2
[Ref.: #43797]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43797]	beta-glucosidase	-	3.2.1.21
[Ref.: #43797]	catalase	+	1.11.1.6
[Ref.: #43797]	chymotrypsin	-	3.4.4.5
[Ref.: #43797]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43797]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43797]	esterase (C 4)	+
[Ref.: #43797]	esterase Lipase (C 8)	+
[Ref.: #43797]	leucine arylamidase	+	3.4.11.1
[Ref.: #43797]	lipase (C 14)	-
[Ref.: #43797]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43797]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43797]	Sample type/isolated from	Rhizosphere of Panax notoginseng
[Ref.: #43797]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #43797]	Country	China
[Ref.: #43797]	Country ISO 3 Code	CHN
[Ref.: #43797]	Continent	Asia
[Ref.: #43797]	Geographic location	23.8010°/103.6300°

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of Panax notoginseng from Yunnan Province
[Ref.: #67770]	Host species	Panax notoginseng
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP076295 (>99% sequence identity) for Luteimonas notoginsengisoli subclade from Microbeatlas

Aquatic Samples	339
Soil Samples	312
Animal Samples	73
Plant Samples	106
Total Samples	830

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43797]	Luteimonas notoginsengisoli strain SYP-B804 16S ribosomal RNA gene, partial sequence	KP076295		GenBank ENA

[Ref.: #67770]

GC-content

71 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43797]

Culture collection no.

KCTC 42211, JCM 30329

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteimonas notoginsengisoli sp. nov., isolated from rhizosphere.	Cheng J, Zhang MY, Wang WX, Manikprabhu D, Salam N, Zhang TY, Wu YY, Li WJ, Zhang YX	Int J Syst Evol Microbiol	10.1099/ijsem.0.000816	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43797

Juan Cheng, Meng-Yue Zhang, Wei-Xun Wang, Deene Manikprabhu, Nimaichand Salam, Tian-Yuan Zhang, Ying-Ying Wu, Wen-Jun Li, Yi-Xuan Zhang: Luteimonas notoginsengisoli sp. nov., isolated from rhizosphere. IJSEM 66: 946 - 950 2016 ( DOI 10.1099/ijsem.0.000816 , PubMed 26637822 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Luteimonas notoginsengisoli in external resources:
SILVA
BRENDA
PANGAEA
GBIF