Name: Lacinutrix gracilariae Lxc1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140924

Type strain:

Species: Lacinutrix gracilariae

Strain Designation: Lxc1, Lxc1T

Culture col. no.: MCCC 1A01567, KCTC 42808

Strain history: <- Zhaobin Huang and Qiliang Lai, Third institue of Oceanography, State Oceanic Administraion(SOA), China

NCBI tax ID(s): 1747198 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Lacinutrix gracilariae Lxc1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from The surface of a marine red alga, Gracilaria sp., which was collected from the coastal regions in Jinjiang.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Lacinutrix*
	Species	**Lacinutrix gracilariae**
	Full Scientific Name (LPSN)	Lacinutrix gracilariae Huang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43796]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43796]	Cell length	1.4-1.9 µm

[Ref.: #43796]	Cell width	0.5 µm

[Ref.: #43796]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43796]	Colony size	1 mm
[Ref.: #43796]	Colony color	Orange-yellow
[Ref.: #43796]	Colony shape	circular
[Ref.: #43796]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43796]

Culture medium

Marine agar (MA)

[Ref.: #43796]

Culture medium growth

		Temperature
[Ref.: #43796]	growth	5-35 °C
[Ref.: #43796]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #43796]			optimum	7
[Ref.: #43796]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43796]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43796]		NaCl		growth	0.5-8	%(w/v)
[Ref.: #43796]		NaCl		optimum	2	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43796]	4-nitrophenyl beta-D-galactopyranoside ChEBI	+/-	hydrolysis
[Ref.: #43796]	adipate ChEBI	-	growth
[Ref.: #43796]	agar ChEBI	+	hydrolysis
[Ref.: #43796]	amygdalin ChEBI	-	fermentation
[Ref.: #43796]	arabinose ChEBI	-	fermentation
[Ref.: #43796]	casein	-	hydrolysis
[Ref.: #43796]	citrate ChEBI	-	assimilation
[Ref.: #43796]	D-mannose ChEBI	+	assimilation
[Ref.: #43796]	decanoate ChEBI	-	growth
[Ref.: #43796]	esculin ChEBI	-	hydrolysis
[Ref.: #43796]	glucose ChEBI	-	fermentation
[Ref.: #43796]	L-arabinose ChEBI	-	growth
[Ref.: #43796]	malate ChEBI	-	growth
[Ref.: #43796]	maltose ChEBI	+	assimilation
[Ref.: #43796]	mannitol ChEBI	+	fermentation
[Ref.: #43796]	melibiose ChEBI	-	fermentation
[Ref.: #43796]	myo-inositol ChEBI	-	fermentation
[Ref.: #43796]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43796]	nitrate ChEBI	-	reduction
[Ref.: #43796]	phenylacetate ChEBI	-	growth
[Ref.: #43796]	potassium gluconate ChEBI	-	growth
[Ref.: #43796]	rhamnose ChEBI	-	fermentation
[Ref.: #43796]	skimmed milk	+	hydrolysis
[Ref.: #43796]	sodium citrate ChEBI	-	growth
[Ref.: #43796]	sorbitol ChEBI	-	fermentation
[Ref.: #43796]	starch ChEBI	-	hydrolysis
[Ref.: #43796]	sucrose ChEBI	-	fermentation
[Ref.: #43796]	tributyrin ChEBI	-	hydrolysis
[Ref.: #43796]	tryptophan ChEBI	-	energy source
[Ref.: #43796]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43796]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43796]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43796]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43796]	xylan ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43796]	acetoin ChEBI	yes
[Ref.: #43796]	hydrogen sulfide ChEBI	no
[Ref.: #43796]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #43796]		acetoin ChEBI	+
[Ref.: #43796]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43796]	acid phosphatase	+	3.1.3.2
[Ref.: #43796]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43796]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43796]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43796]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43796]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #43796]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43796]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43796]	beta-galactosidase	-	3.2.1.23
[Ref.: #43796]	beta-glucosidase	-	3.2.1.21
[Ref.: #43796]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43796]	cystine aminopeptidase	+/-	3.4.11.3
[Ref.: #43796]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43796]	esterase (C 4)	+/-
[Ref.: #43796]	esterase Lipase (C 8)	+
[Ref.: #43796]	gelatinase	+
[Ref.: #43796]	leucine aminopeptidase	+/-	3.4.1.1
[Ref.: #43796]	lipase (C 14)	-
[Ref.: #43796]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43796]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43796]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43796]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43796]	trypsin	+	3.4.21.4
[Ref.: #43796]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43796]	urease	-	3.5.1.5
[Ref.: #43796]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43796]	Sample type/isolated from	The surface of a marine red alga, Gracilaria sp., which was collected from the coastal regions in Jinjiang
[Ref.: #43796]	Geographic location (country and/or sea, region)	Jinjiang, Fujian Province
[Ref.: #43796]	Country	China
[Ref.: #43796]	Country ISO 3 Code	CHN
[Ref.: #43796]	Continent	Asia
[Ref.: #43796]	Isolation date	2015-03

[Ref.: #67771]	Sample type/isolated from	From the surface of a marine red algae `Gracillaria` sp.
[Ref.: #67771]	Geographic location (country and/or sea, region)	coastal regions in Jingjiang, Fujian Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast
#Host	#Algae	#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT350410 (>99% sequence identity) for Lacinutrix gracilariae from Microbeatlas

Aquatic Samples	78
Soil Samples	42
Animal Samples	3
Plant Samples
Total Samples	123

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43796]	Lacinutrix gracilariae strain Lxc1 16S ribosomal RNA gene, partial sequence	KT350410		GenBank ENA

[Ref.: #43796]

GC-content

31.7 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #43796]

Culture collection no.

MCCC 1A01567, KCTC 42808

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacinutrix gracilariae sp. nov., isolated from the surface of a marine red alga Gracilaria sp.	Huang Z, Li G, Lai Q, Gu L, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000755	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43796

Zhaobin Huang, Guizhen Li, Qiliang Lai, Li Gu, Zongze Shao: Lacinutrix gracilariae sp. nov., isolated from the surface of a marine red alga Gracilaria sp.. IJSEM 66: 587 - 591 2016 ( DOI 10.1099/ijsem.0.000755 , PubMed 26554356 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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