Strain identifier

BacDive ID: 140925

Type strain: Yes

Species: Luteimonas notoginsengisoli

Strain Designation: SYP-B804

Strain history: Y.-X. Zhang; Shenyang Pharm. Univ., China; SYP-B804.

NCBI tax ID(s): 1578200 (species)

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General

@ref: 43797

BacDive-ID: 140925

keywords: 16S sequence, Bacteria, Gram-negative, motile, rod-shaped

description: Luteimonas notoginsengisoli SYP-B804 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Rhizosphere of Panax notoginseng.

NCBI tax id

  • NCBI tax id: 1578200
  • Matching level: species

strain history

  • @ref: 67770
  • history: Y.-X. Zhang; Shenyang Pharm. Univ., China; SYP-B804.

doi: 10.13145/bacdive140925.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Luteimonas
  • species: Luteimonas notoginsengisoli
  • full scientific name: Luteimonas notoginsengisoli Cheng et al. 2016

@ref: 43797

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Luteimonas

species: Luteimonas notoginsengisoli

strain designation: SYP-B804

type strain: yes

Morphology

cell morphology

  • @ref: 43797
  • gram stain: negative
  • cell length: 0.9-1.9 µm
  • cell width: 0.3-0.4 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: monotrichous, polar

Culture and growth conditions

culture temp

@refgrowthtypetemperature
43797positivegrowth15-40
43797positiveoptimum28-32
67770positivegrowth28

culture pH

@refabilitytypepHPH range
43797positivegrowth5-9alkaliphile
43797positiveoptimum7-8

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
43797NaClpositivegrowth0-2 %(w/v)
43797NaClpositiveoptimum1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43797167632-oxobutanoate-assimilation
43797739183-O-methyl-D-glucose-assimilation
43797181014-hydroxyphenylacetic acid-assimilation
4379717128adipate-assimilation
4379717925alpha-D-glucose-assimilation
43797645522-hydroxybutyrate-assimilation
4379736219alpha-lactose-assimilation
4379773706bromosuccinate-assimilation
4379717057cellobiose-assimilation
4379716947citrate-assimilation
4379718333D-arabitol-assimilation
4379729990D-aspartate-assimilation
4379712936D-galactose-assimilation
4379716899D-mannitol-assimilation
4379716523D-serine-assimilation
4379717924D-sorbitol-assimilation
437974853esculin-assimilation
4379715740formate-assimilation
4379716865gamma-aminobutyric acid-assimilation
4379724265gluconate-assimilation
4379717754glycerol-assimilation
4379717596inosine-assimilation
4379716977L-alanine-assimilation
4379715971L-histidine-assimilation
4379762345L-rhamnose-assimilation
4379725115malate-assimilation
4379717306maltose-assimilation
4379728053melibiose-assimilation
4379737657methyl D-glucoside-assimilation
4379751850methyl pyruvate-assimilation
4379717268myo-inositol-assimilation
4379728037N-acetylgalactosamine-assimilation
4379735418n-acetylneuraminate-assimilation
4379716634raffinose-assimilation
4379717814salicin-assimilation
4379717164stachyose-assimilation
4379717992sucrose-assimilation
4379727082trehalose-assimilation
4379732528turanose-assimilation
4379762968cellulose-hydrolysis
4379728017starch-hydrolysis
4379716199urea-hydrolysis
4379717632nitrate-reduction
4379730089acetate+assimilation
4379713705acetoacetate+assimilation
4379715824D-fructose+assimilation
4379778697D-fructose 6-phosphate+assimilation
4379718024D-galacturonic acid+assimilation
4379714314D-glucose 6-phosphate+assimilation
4379723652dextrin+assimilation
437975291gelatin+assimilation
4379728066gentiobiose+assimilation
4379732323glucuronamide+assimilation
4379770744glycine-proline+assimilation
4379729991L-aspartate+assimilation
4379717464L-galactonic acid gamma-lactone+assimilation
4379729985L-glutamate+assimilation
4379717115L-serine+assimilation
43797506227N-acetylglucosamine+assimilation
4379717309pectin+assimilation
4379717272propionate+assimilation
4379753423tween 40+assimilation
437975291gelatin+hydrolysis
4379753424tween 20+hydrolysis
4379753423tween 40+hydrolysis
4379753425tween 60+hydrolysis
4379753426tween 80+hydrolysis
43797309162-oxoglutarate+/-assimilation
437978295beta-hydroxybutyrate+/-assimilation
4379728847D-fucose+/-assimilation
437978391D-gluconate+/-assimilation
4379715748D-glucuronate+/-assimilation
4379716024D-mannose+/-assimilation
4379716467L-arginine+/-assimilation
4379718287L-fucose+/-assimilation
4379763154N-acetyl-beta-D-mannosamine+/-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
4379771321fusidateyesyes
4379732735guanidinium chlorideyesyes
4379716523d-serineyesyes
4379728001vancomycinyesyes
43797161680aztreonamyesyes
43797100147nalidixic acidyesyes

metabolite production

  • @ref: 43797
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
43797acid phosphatase+3.1.3.2
43797alkaline phosphatase+3.1.3.1
43797esterase (C 4)+
43797esterase Lipase (C 8)+
43797leucine arylamidase+3.4.11.1
43797naphthol-AS-BI-phosphohydrolase+
43797catalase+1.11.1.6
43797cytochrome oxidase-1.9.3.1
43797lipase (C 14)-
43797chymotrypsin-3.4.4.5
43797beta-glucosidase-3.2.1.21
43797valine arylamidase+/-
43797cystine arylamidase+/-3.4.11.3

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudehost species
43797Rhizosphere of Panax notoginsengYunnan ProvinceChinaCHNAsia23.801103.63
67770Rhizosphere of Panax notoginseng from Yunnan ProvinceChinaCHNAsiaPanax notoginseng

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_126048.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_2080;97_2507;98_84613;99_126048&stattab=map
  • Last taxonomy: Luteimonas notoginsengisoli subclade
  • 16S sequence: KP076295
  • Sequence Identity:
  • Total samples: 830
  • soil counts: 312
  • aquatic counts: 339
  • animal counts: 73
  • plant counts: 106

Sequence information

16S sequences

  • @ref: 43797
  • description: Luteimonas notoginsengisoli strain SYP-B804 16S ribosomal RNA gene, partial sequence
  • accession: KP076295
  • database: nuccore

GC content

  • @ref: 67770
  • GC-content: 71
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43797

culture collection no.: KCTC 42211, JCM 30329

literature

  • topic: Phylogeny
  • Pubmed-ID: 26637822
  • title: Luteimonas notoginsengisoli sp. nov., isolated from rhizosphere.
  • authors: Cheng J, Zhang MY, Wang WX, Manikprabhu D, Salam N, Zhang TY, Wu YY, Li WJ, Zhang YX
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000816
  • year: 2015

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43797Juan Cheng, Meng-Yue Zhang, Wei-Xun Wang, Deene Manikprabhu, Nimaichand Salam, Tian-Yuan Zhang, Ying-Ying Wu, Wen-Jun Li, Yi-Xuan ZhangLuteimonas notoginsengisoli sp. nov., isolated from rhizosphere10.1099/ijsem.0.000816IJSEM 66: 946-950 201626637822
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/