Streptomyces daqingensis (CGMCC 4.7178, JCM 30057, DSM 111118)

Name: Streptomyces daqingensis (CGMCC 4.7178, JCM 30057, DSM 111118)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140909

Type strain

Strain Designation NEAU-ZJC8

Culture col. no. CGMCC 4.7178 JCM 30057 DSM 111118 NEAU-ZJC8

NCBI tax ID(s) 1472640

Special Collections DSMZ JCM Literature strains

Links

Streptomyces daqingensis NEAU-ZJC8 is an aerobe, spore-forming, Gram-positive prokaryote that was isolated from Saline-alkaline soil collected from Heilongjiang Bayi Agricultural University.

spore-forming Gram-positive aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 408090

JCM 30057,DSM 111118

@ref 20215

Last LPSN update 2025-12-16 10:03:43

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces daqingensis

Full scientific name Streptomyces daqingensis Pan et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
43756	positive
125439	positive	99.5
125438	positive	91.446

Multimedia

@ref:	66450
multimedia content:	DSM_111118.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_111118.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43756	ISP 2
43756	ISP 3
43756	ISP 4
43756	ISP 7
66450	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
66450	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
66450	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43756	positive	growth	16-35
43756	positive	optimum	28	mesophilic
66450	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43756	positive	optimum	7
43756	positive	growth	5-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43756	aerobe
125438	aerobe	94.06
125439	obligate aerobe	98.4

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
43756	spiral spore chains with smooth-surfaced spores	spore
125438				91.974

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43756	NaCl	positive	growth	0-11 %(w/v)
43756	NaCl	positive	optimum	2 %(w/v)

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₄), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43756	62968 ChEBI	cellulose	-	degradation
43756	16919 ChEBI	creatine	+	nitrogen source
43756	15824 ChEBI	D-fructose	+	carbon source
43756	12936 ChEBI	D-galactose	-	nitrogen source
43756	17634 ChEBI	D-glucose	+	carbon source
43756	16899 ChEBI	D-mannitol	-	nitrogen source
43756	16988 ChEBI	D-ribose	-	nitrogen source
43756	17924 ChEBI	D-sorbitol	+	carbon source
43756	65327 ChEBI	D-xylose	-	nitrogen source
43756	4853 ChEBI	esculin	+	hydrolysis
43756	5291 ChEBI	gelatin	+	hydrolysis
43756	15428 ChEBI	glycine	-	nitrogen source
43756		L-alanine 4-nitroanilide	+	nitrogen source
43756	30849 ChEBI	L-arabinose	-	nitrogen source
43756	16467 ChEBI	L-arginine	-	nitrogen source
43756	17196 ChEBI	L-asparagine	-	nitrogen source
43756	29991 ChEBI	L-aspartate	-	nitrogen source
43756	29985 ChEBI	L-glutamate	-	nitrogen source
43756	18050 ChEBI	L-glutamine	-	nitrogen source
43756	17203 ChEBI	L-proline	+	nitrogen source
43756	62345 ChEBI	L-rhamnose	+	carbon source
43756	17115 ChEBI	L-serine	-	nitrogen source
43756	16857 ChEBI	L-threonine	-	nitrogen source
43756	17895 ChEBI	L-tyrosine	-	nitrogen source
43756	17716 ChEBI	lactose	+	carbon source
43756	17306 ChEBI	maltose	+	carbon source
43756	37684 ChEBI	mannose	+	carbon source
43756	17268 ChEBI	myo-inositol	-	nitrogen source
43756	17632 ChEBI	nitrate	-	reduction
43756	16634 ChEBI	raffinose	-	nitrogen source
43756	28017 ChEBI	starch	-	hydrolysis
43756	17992 ChEBI	sucrose	+	carbon source
43756	16199 ChEBI	urea	-	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43756	16136 ChEBI	hydrogen sulfide
43756	89634 ChEBI	melanin

Enzymes

@ref	Value	Activity	Ec
43756	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Alkaline	-
#Condition	#Saline	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43756	Saline-alkaline soil collected from Heilongjiang Bayi Agricultural University	Daqing City, Heilongjiang Province	China	CHN	Asia	46.583	125.163 46.583/125.163
66450	saline alkaline soil	Heilongjiang Bayi Agricultural University,Daqing City, Heilongjiang Province, north-east China	China	CHN	Asia	46.5833	125.15 46.5833/125.15
67770	Saline-alkaline soil from Heilongjiang Bayi Agric. Univ.	Daqing City, Heilongjiang Province, north-east China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KF982696 (>99% sequence identity) for Streptomyces daqingensis from Microbeatlas

Aquatic Samples
Soil Samples	5
Animal Samples	6
Plant Samples	2
Total Samples	13

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66450	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464589v1 assembly for Streptomyces daqingensis CGMCC 4.7178	scaffold	GCA_014645895	1472640.3	8109731651	1472640	68.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43756	Streptomyces daqingensis strain NEAU-ZJC8 16S ribosomal RNA gene, partial sequence	KF982696
66450	Streptomyces daqingensis strain NEAU-ZJC8 16S ribosomal RNA gene, partial sequence	KF982696.1	1522		1472640

GC content

@ref	GC-content (mol%)	Method
66450	72.7	thermal denaturation, midpoint method (Tm)
67770	72-73.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces daqingensis CGMCC 4.7178
NCBI: GCA_014645895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	74.20	no
125439	motility	BacteriaNetⓘ	no	86.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces daqingensis CGMCC 4.7178
NCBI: GCA_014645895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.45	yes
125438	anaerobic	anaerobicⓘ	no	96.51	no
125438	aerobic	aerobicⓘ	yes	94.06	yes
125438	spore-forming	spore-formingⓘ	yes	91.97	yes
125438	thermophilic	thermophileⓘ	no	91.92	yes
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces daqingensis sp. nov., isolated from saline-alkaline soil.	Pan T, He H, Li C, Zhao J, Zhang Y, Li J, Wang X, Liu C, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000887	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43756	Tong Pan, Hairong He, Chuang Li, Junwei Zhao, Yuejing Zhang, Jiansong Li, Xiangjing Wang, Chongxi Liu, Ji Zhang, Wensheng Xiang: Streptomyces daqingensis sp. nov., isolated from saline–alkaline soil. IJSEM 66: 1358 - 1363 2016 ( DOI 10.1099/ijsem.0.000887 , PubMed 26755354 )
#66450	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111118
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces daqingensis (CGMCC 4.7178, JCM 30057, DSM 111118)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014645895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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