Streptomyces daqingensis NEAU-ZJC8 | Type strain | CGMCC 4.7178, JCM 30057, DSM 111118

Caption:

Medium 65 28°C

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Information on culture and growth conditions Culture and growth conditions

Culture medium

ISP 2

Culture medium growth

Culture medium

ISP 3

Culture medium growth

Culture medium

ISP 4

Culture medium growth

Culture medium

ISP 7

Culture medium growth

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

YEAST STARCH AGAR (A) (DSMZ Medium 1027)

Culture medium growth

Culture medium link

Culture medium composition

		Temperature
[Ref.: #43756]	growth	16-35 °C
[Ref.: #43756]	optimum	28 °C
[Ref.: #66450]	growth	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #43756]	Temperature range	mesophilic
[Ref.: #66450]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43756]			optimum	7
[Ref.: #43756]			growth	5-11

Information on physiology and metabolism Physiology and metabolism

What are isolation sources categories?

Oxygen tolerance

aerobe

[Ref.: #43756]	Spore description	spiral spore chains with smooth-surfaced spores
[Ref.: #43756]	Type of spore	spore
[Ref.: #43756]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43756]		NaCl		growth	0-11	%(w/v)
[Ref.: #43756]		NaCl		optimum	2	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₄), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43756]	cellulose ChEBI	-	degradation
[Ref.: #43756]	creatine ChEBI	+	nitrogen source
[Ref.: #43756]	D-fructose ChEBI	+	carbon source
[Ref.: #43756]	D-galactose ChEBI	-	nitrogen source
[Ref.: #43756]	D-glucose ChEBI	+	carbon source
[Ref.: #43756]	D-mannitol ChEBI	-	nitrogen source
[Ref.: #43756]	D-ribose ChEBI	-	nitrogen source
[Ref.: #43756]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43756]	D-xylose ChEBI	-	nitrogen source
[Ref.: #43756]	esculin ChEBI	+	hydrolysis
[Ref.: #43756]	gelatin ChEBI	+	hydrolysis
[Ref.: #43756]	glycine ChEBI	-	nitrogen source
[Ref.: #43756]	L-alanine 4-nitroanilide	+	nitrogen source
[Ref.: #43756]	L-arabinose ChEBI	-	nitrogen source
[Ref.: #43756]	L-arginine ChEBI	-	nitrogen source
[Ref.: #43756]	L-asparagine ChEBI	-	nitrogen source
[Ref.: #43756]	L-aspartate ChEBI	-	nitrogen source
[Ref.: #43756]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #43756]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #43756]	L-proline ChEBI	+	nitrogen source
[Ref.: #43756]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43756]	L-serine ChEBI	-	nitrogen source
[Ref.: #43756]	L-threonine ChEBI	-	nitrogen source
[Ref.: #43756]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #43756]	lactose ChEBI	+	carbon source
[Ref.: #43756]	maltose ChEBI	+	carbon source
[Ref.: #43756]	mannose ChEBI	+	carbon source
[Ref.: #43756]	myo-inositol ChEBI	-	nitrogen source
[Ref.: #43756]	nitrate ChEBI	-	reduction
[Ref.: #43756]	raffinose ChEBI	-	nitrogen source
[Ref.: #43756]	starch ChEBI	-	hydrolysis
[Ref.: #43756]	sucrose ChEBI	+	carbon source
[Ref.: #43756]	urea ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43756]		hydrogen sulfide ChEBI	no
[Ref.: #43756]		melanin ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43756]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43756]	Sample type/isolated from	Saline-alkaline soil collected from Heilongjiang Bayi Agricultural University
[Ref.: #43756]	Geographic location (country and/or sea, region)	Daqing City, Heilongjiang Province
[Ref.: #43756]	Country	China
[Ref.: #43756]	Country ISO 3 Code	CHN
[Ref.: #43756]	Continent	Asia
[Ref.: #43756]	Geographic location	46.5830°/125.1630°

[Ref.: #66450]	Sample type/isolated from	saline alkaline soil
[Ref.: #66450]	Geographic location (country and/or sea, region)	Heilongjiang Bayi Agricultural University,Daqing City, Heilongjiang Province, north-east China
[Ref.: #66450]	Country	China
[Ref.: #66450]	Country ISO 3 Code	CHN
[Ref.: #66450]	Continent	Asia
[Ref.: #66450]	Geographic location	46.6181°/0.1500°

[Ref.: #67770]	Sample type/isolated from	Saline-alkaline soil from Heilongjiang Bayi Agric. Univ.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daqing City, Heilongjiang Province, north-east China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition	#Alkaline	-
#Condition	#Saline	-
#Environmental	#Terrestrial	#Soil

[Ref.: #69479]

Global distribution of 16S sequence KF982696 (>99% sequence identity) for Streptomyces daqingensis from Microbeatlas

Aquatic Samples
Soil Samples	5
Animal Samples	6
Plant Samples	2
Total Samples	13

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43756]	16S rRNA gene sequence	KF982696		GenBank
[Ref.: #66450]	Streptomyces daqingensis strain NEAU-ZJC8 16S ribosomal RNA gene, partial sequence	KF982696.1	1522	ENA	1472640 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces daqingensis CGMCC 4.7178	GCA_014645895	scaffold	GenBank	1472640 tax ID	*
[Ref.: #66792]	Streptomyces daqingensis strain CGMCC 4.7178	1472640.3	wgs	PATRIC	1472640 tax ID	*

[Ref.: #66450]	GC-content	72.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72-73.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces daqingensis CGMCC 4.7178 NCBI: GCA_014645895.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces daqingensis CGMCC 4.7178 NCBI: GCA_014645895.1
[Ref.: #69480]	flagellated	no	98.572	yes
[Ref.: #69480]	gram-positive	yes	92.104	yes
[Ref.: #69480]	anaerobic	no	98.955	yes
[Ref.: #69480]	aerobic	yes	94.916	yes
[Ref.: #69480]	halophile	no	77.487	no
[Ref.: #69480]	spore-forming	yes	94.015	no
[Ref.: #69480]	glucose-util	yes	89.853	no
[Ref.: #69480]	thermophile	no	91.916	yes
[Ref.: #69480]	motile	no	95.023	yes
[Ref.: #69480]	glucose-ferment	no	90.966	no

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