Strain identifier

BacDive ID: 140909

Type strain: Yes

Species: Streptomyces daqingensis

Strain Designation: NEAU-ZJC8

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-ZJC8.

NCBI tax ID(s): 1472640 (species)

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General

@ref: 66450

BacDive-ID: 140909

DSM-Number: 111118

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Streptomyces daqingensis NEAU-ZJC8 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Saline-alkaline soil collected from Heilongjiang Bayi Agricultural University.

NCBI tax id

  • NCBI tax id: 1472640
  • Matching level: species

strain history

@refhistory
66450>-JCM>-C. Liu; Northeast Agric. Univ., China.
67770C. Liu; Northeast Agric. Univ., China; NEAU-ZJC8.

doi: 10.13145/bacdive140909.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces daqingensis
  • full scientific name: Streptomyces daqingensis Pan et al. 2016

@ref: 66450

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces daqingensis

full scientific name: Streptomyces daqingensis Pan et al. 2016

strain designation: NEAU-ZJC8

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
43756positiveno
69480positive91.446

multimedia

  • @ref: 66450
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_111118.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43756ISP 2yes
43756ISP 3yes
43756ISP 4yes
43756ISP 7yes
66450GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
66450ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
66450STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
66450YEAST STARCH AGAR (A) (DSMZ Medium 1027)yeshttps://mediadive.dsmz.de/medium/1027Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
43756positivegrowth16-35
43756positiveoptimum28
66450positivegrowth28
67770positivegrowth28

culture pH

@refabilitytypepHPH range
43756positivegrowth5-11alkaliphile
43756positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
43756aerobe
69480aerobe94.06

spore formation

@refspore descriptiontype of sporespore formationconfidence
43756spiral spore chains with smooth-surfaced sporessporeyes
69480yes91.974
69481yes100

halophily

@refsaltgrowthtested relationconcentration
43756NaClpositivegrowth0-11 %(w/v)
43756NaClpositiveoptimum2 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H4), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4375662968cellulose-degradation
4375616199urea-degradation
4375628017starch-hydrolysis
4375612936D-galactose-nitrogen source
4375616899D-mannitol-nitrogen source
4375616988D-ribose-nitrogen source
4375665327D-xylose-nitrogen source
4375615428glycine-nitrogen source
4375617268myo-inositol-nitrogen source
4375630849L-arabinose-nitrogen source
4375616467L-arginine-nitrogen source
4375617196L-asparagine-nitrogen source
4375629991L-aspartate-nitrogen source
4375629985L-glutamate-nitrogen source
4375618050L-glutamine-nitrogen source
4375617115L-serine-nitrogen source
4375616857L-threonine-nitrogen source
4375617895L-tyrosine-nitrogen source
4375616634raffinose-nitrogen source
4375617632nitrate-reduction
4375615824D-fructose+carbon source
4375617634D-glucose+carbon source
4375617924D-sorbitol+carbon source
4375662345L-rhamnose+carbon source
4375617716lactose+carbon source
4375617306maltose+carbon source
4375637684mannose+carbon source
4375617992sucrose+carbon source
437564853esculin+hydrolysis
437565291gelatin+hydrolysis
4375616919creatine+nitrogen source
43756L-alanine 4-nitroanilide+nitrogen source
4375617203L-proline+nitrogen source

metabolite production

@refChebi-IDmetaboliteproduction
4375616136hydrogen sulfideno
4375689634melaninno

enzymes

  • @ref: 43756
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43756Saline-alkaline soil collected from Heilongjiang Bayi Agricultural UniversityDaqing City, Heilongjiang ProvinceChinaCHNAsia46.583125.163
66450saline alkaline soilHeilongjiang Bayi Agricultural University,Daqing City, Heilongjiang Province, north-east ChinaChinaCHNAsia46.61810.15
67770Saline-alkaline soil from Heilongjiang Bayi Agric. Univ.Daqing City, Heilongjiang Province, north-east ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Condition#Alkaline
#Condition#Saline
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_53002.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_1811;97_10604;98_13003;99_53002&stattab=map
  • Last taxonomy: Streptomyces daqingensis
  • 16S sequence: KF982696
  • Sequence Identity:
  • Total samples: 13
  • soil counts: 5
  • animal counts: 6
  • plant counts: 2

Safety information

risk assessment

  • @ref: 66450
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessiondatabaselengthNCBI tax ID
43756Streptomyces daqingensis strain NEAU-ZJC8 16S ribosomal RNA gene, partial sequenceKF982696nuccore
66450Streptomyces daqingensis strain NEAU-ZJC8 16S ribosomal RNA gene, partial sequenceKF982696.1nuccore15221472640

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces daqingensis CGMCC 4.7178GCA_014645895scaffoldncbi1472640
66792Streptomyces daqingensis strain CGMCC 4.71781472640.3wgspatric1472640

GC content

@refGC-contentmethod
6645072.7thermal denaturation, midpoint method (Tm)
6777072-73.4thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes91.446yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.512no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes94.06yes
69480spore-formingspore-formingAbility to form endo- or exosporesyes91.974yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno91.922yes
69480flagellatedmotile2+Ability to perform flagellated movementno89.5yes

External links

@ref: 66450

culture collection no.: CGMCC 4.7178, JCM 30057, DSM 111118

straininfo link

  • @ref: 96809
  • straininfo: 408090

literature

  • topic: Phylogeny
  • Pubmed-ID: 26755354
  • title: Streptomyces daqingensis sp. nov., isolated from saline-alkaline soil.
  • authors: Pan T, He H, Li C, Zhao J, Zhang Y, Li J, Wang X, Liu C, Zhang J, Xiang W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000887
  • year: 2016

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43756Tong Pan, Hairong He, Chuang Li, Junwei Zhao, Yuejing Zhang, Jiansong Li, Xiangjing Wang, Chongxi Liu, Ji Zhang, Wensheng XiangStreptomyces daqingensis sp. nov., isolated from saline–alkaline soil10.1099/ijsem.0.000887IJSEM 66: 1358-1363 201626755354
66450Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-111118Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111118)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96809Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408090.1