Name: Paenibacillus cathormii BK114-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140900

Type strain:

Species: Paenibacillus cathormii

Strain Designation: BK114-2

Culture col. no.: KCTC 33251, TISTR 2282

Strain history: <- Jaruwan Sitdhipol, Thailand

NCBI tax ID(s): 1539108 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Paenibacillus cathormii BK114-2 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from Bark of the tree Cathormion umbellatum.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus cathormii**
	Full Scientific Name (LPSN)	Paenibacillus cathormii Sitdhipol et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43739]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #43739]	Cell length	1.5-3 µm

[Ref.: #43739]	Cell width	0.4-0.6 µm

[Ref.: #43739]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43739]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #43739]	Flagellum arrangement	peritrichous
[Ref.: #67771]	Flagellum arrangement	peritrichous

[Ref.: #43739]	Colony size	0.5-1 mm
[Ref.: #43739]	Colony color	Non-pigmented, white
[Ref.: #43739]	Colony shape	circular
[Ref.: #43739]	Incubation period	2 days
[Ref.: #43739]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43739]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43739]

Culture medium growth

		Temperature
[Ref.: #43739]	growth	15-45 °C
[Ref.: #43739]	optimum	30-37 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43739]			optimum	7
[Ref.: #43739]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43739]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43739]	Spore description	Ellipsoidal endospores at the terminal of swollen sporangia
[Ref.: #43739]	Type of spore	endospore
[Ref.: #43739]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43739]		NaCl		growth	0-1	%(w/v)
[Ref.: #43739]		NaCl	no	growth	2	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43739]	amygdalin ChEBI	+	builds acid from
[Ref.: #43739]	arbutin ChEBI	+	builds acid from
[Ref.: #43739]	casein	+	hydrolysis
[Ref.: #43739]	cellobiose ChEBI	+	builds acid from
[Ref.: #43739]	citrate ChEBI	-	assimilation
[Ref.: #43739]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43739]	D-arabitol ChEBI	+	builds acid from
[Ref.: #43739]	D-fructose ChEBI	+	builds acid from
[Ref.: #43739]	D-fucose ChEBI	-	builds acid from
[Ref.: #43739]	D-galactose ChEBI	+	builds acid from
[Ref.: #43739]	D-glucose ChEBI	+	builds acid from
[Ref.: #43739]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43739]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43739]	D-mannose ChEBI	+	builds acid from
[Ref.: #43739]	D-ribose ChEBI	+	builds acid from
[Ref.: #43739]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43739]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43739]	D-xylose ChEBI	+	builds acid from
[Ref.: #43739]	erythritol ChEBI	-	builds acid from
[Ref.: #43739]	esculin ferric citrate	+	builds acid from
[Ref.: #43739]	galactitol ChEBI	-	builds acid from
[Ref.: #43739]	gelatin ChEBI	-	hydrolysis
[Ref.: #43739]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43739]	glucose ChEBI	+	fermentation
[Ref.: #43739]	glycerol ChEBI	-	builds acid from
[Ref.: #43739]	glycogen ChEBI	-	builds acid from
[Ref.: #43739]	inulin ChEBI	-	builds acid from
[Ref.: #43739]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43739]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43739]	L-fucose ChEBI	+	builds acid from
[Ref.: #43739]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43739]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43739]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43739]	L-xylose ChEBI	-	builds acid from
[Ref.: #43739]	lactose ChEBI	+	builds acid from
[Ref.: #43739]	maltose ChEBI	+	builds acid from
[Ref.: #43739]	melezitose ChEBI	-	builds acid from
[Ref.: #43739]	melibiose ChEBI	+	builds acid from
[Ref.: #43739]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43739]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43739]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #43739]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43739]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43739]	nitrate ChEBI	+	reduction
[Ref.: #43739]	nitrite ChEBI	-	reduction
[Ref.: #43739]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43739]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43739]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #43739]	raffinose ChEBI	+	builds acid from
[Ref.: #43739]	ribitol ChEBI	-	builds acid from
[Ref.: #43739]	salicin ChEBI	+	builds acid from
[Ref.: #43739]	starch ChEBI	-	hydrolysis
[Ref.: #43739]	starch ChEBI	+	builds acid from
[Ref.: #43739]	sucrose ChEBI	-	builds acid from
[Ref.: #43739]	trehalose ChEBI	+	builds acid from
[Ref.: #43739]	turanose ChEBI	-	builds acid from
[Ref.: #43739]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43739]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43739]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43739]	acetoin ChEBI	no
[Ref.: #43739]	hydrogen sulfide ChEBI	no
[Ref.: #43739]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43739]		acetoin ChEBI	-
[Ref.: #43739]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #43739]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43739]	beta-galactosidase	+	3.2.1.23
[Ref.: #43739]	catalase	-	1.11.1.6
[Ref.: #43739]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43739]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43739]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43739]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43739]

Fatty acid	Percentage	ECL
C18:1ω6c / C18:1ω7c	65.92
11-methyl C18:1ω7c	10.54
C18:0	6.49
C12:0ALDE / C14:0 3-OH / iso-C16:1I / Unknown ECL	5.53	10928
unknown ECL 18.846 / C19:1ω6c / C19:0&	4.42	18846
10-methyl C19:0	2.15
C16:0	1.54
C16:0 3OH	1.47
C18:1ω9c	0.84

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43739]	Sample type/isolated from	Bark of the tree Cathormion umbellatum
[Ref.: #43739]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #43739]	Country	Thailand
[Ref.: #43739]	Country ISO 3 Code	THA
[Ref.: #43739]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From bark of `Cathormion umbellatum`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #67771]	Country	Thailand
[Ref.: #67771]	Country ISO 3 Code	THA
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB979873 (>99% sequence identity) for Paenibacillus cathormii subclade from Microbeatlas

Aquatic Samples	6
Soil Samples	7
Animal Samples	6
Plant Samples	10
Total Samples	29

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43739]	Paenibacillus cathormii gene for 16S ribosomal RNA, partial sequence	AB979873		GenBank ENA

[Ref.: #43739]	GC-content	52 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	52.0 mol%

Availability in culture collections External links

[Ref.: #43739]

Culture collection no.

KCTC 33251, TISTR 2282

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus cathormii sp. nov., isolated from tree bark.	Sitdhipol J, Paek J, Sin Y, Park IS, Thamacharoensuk T, Wannissorn B, Tanasupawat S, Chang YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000854	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43739

Jaruwan Sitdhipol, Jayoung Paek, Yeseul Sin, In-Soon Park, Tanatip Thamacharoensuk, Bhusita Wannissorn, Somboon Tanasupawat, Young-Hyo Chang: Paenibacillus cathormii sp. nov., isolated from tree bark. IJSEM 66: 1187 - 1192 2016 ( DOI 10.1099/ijsem.0.000854 , PubMed 26675308 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paenibacillus cathormii in external resources:
SILVA
BRENDA
PANGAEA
GBIF