Strain identifier

BacDive ID: 140900

Type strain: Yes

Species: Paenibacillus cathormii

Strain Designation: BK114-2

Strain history: <- Jaruwan Sitdhipol, Thailand

NCBI tax ID(s): 1539108 (species)

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General

@ref: 43739

BacDive-ID: 140900

keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, Gram-positive, motile, rod-shaped, colony-forming

description: Paenibacillus cathormii BK114-2 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from Bark of the tree Cathormion umbellatum.

NCBI tax id

  • NCBI tax id: 1539108
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Jaruwan Sitdhipol, Thailand

doi: 10.13145/bacdive140900.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus cathormii
  • full scientific name: Paenibacillus cathormii Sitdhipol et al. 2016

@ref: 43739

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus cathormii

strain designation: BK114-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
43739positive1.5-3 µm0.4-0.6 µmrod-shapedyesperitrichous
67771rod-shapedyesperitrichous
67771positive

colony morphology

  • @ref: 43739
  • colony size: 0.5-1 mm
  • colony color: Non-pigmented, white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: TSA agar

Culture and growth conditions

culture medium

  • @ref: 43739
  • name: Trypticase Soy Agar (TSA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43739positivegrowth15-45
43739positiveoptimum30-37mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43739positivegrowth5-9alkaliphile
43739positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43739facultative anaerobe
67771aerobe

spore formation

@refspore descriptiontype of sporespore formation
43739Ellipsoidal endospores at the terminal of swollen sporangiaendosporeyes
67771endosporeyes

halophily

@refsaltgrowthtested relationconcentration
43739NaClpositivegrowth0-1 %(w/v)
43739NaClnogrowth2 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4373916947citrate-assimilation
4373915963ribitol-builds acid from
4373917108D-arabinose-builds acid from
4373928847D-fucose-builds acid from
4373962318D-lyxose-builds acid from
4373917924D-sorbitol-builds acid from
4373916443D-tagatose-builds acid from
4373916813galactitol-builds acid from
4373917113erythritol-builds acid from
4373917754glycerol-builds acid from
4373928087glycogen-builds acid from
4373917268myo-inositol-builds acid from
4373915443inulin-builds acid from
4373918403L-arabitol-builds acid from
4373917266L-sorbose-builds acid from
4373965328L-xylose-builds acid from
437396731melezitose-builds acid from
4373943943methyl alpha-D-mannoside-builds acid from
43739potassium 2-dehydro-D-gluconate-builds acid from
43739potassium 5-dehydro-D-gluconate-builds acid from
4373917992sucrose-builds acid from
4373932528turanose-builds acid from
4373917151xylitol-builds acid from
437395291gelatin-hydrolysis
4373917895L-tyrosine-hydrolysis
4373928017starch-hydrolysis
4373953424tween 20-hydrolysis
4373953426tween 80-hydrolysis
4373916301nitrite-reduction
4373927613amygdalin+builds acid from
4373918305arbutin+builds acid from
4373917057cellobiose+builds acid from
4373918333D-arabitol+builds acid from
4373915824D-fructose+builds acid from
4373912936D-galactose+builds acid from
4373917634D-glucose+builds acid from
4373916899D-mannitol+builds acid from
4373916024D-mannose+builds acid from
4373916988D-ribose+builds acid from
4373965327D-xylose+builds acid from
43739esculin ferric citrate+builds acid from
4373928066gentiobiose+builds acid from
4373930849L-arabinose+builds acid from
4373918287L-fucose+builds acid from
4373962345L-rhamnose+builds acid from
4373917716lactose+builds acid from
4373917306maltose+builds acid from
4373928053melibiose+builds acid from
43739320061methyl alpha-D-glucopyranoside+builds acid from
4373974863methyl beta-D-xylopyranoside+builds acid from
43739506227N-acetylglucosamine+builds acid from
4373932032potassium gluconate+builds acid from
4373916634raffinose+builds acid from
4373917814salicin+builds acid from
4373928017starch+builds acid from
4373927082trehalose+builds acid from
4373917234glucose+fermentation
43739casein+hydrolysis
4373917632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
4373915688acetoinno
4373916136hydrogen sulfideno
4373935581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
4373917234glucose+
4373915688acetoin-

enzymes

@refvalueactivityec
43739arginine dihydrolase+3.5.3.6
43739catalase-1.11.1.6
43739cytochrome oxidase-1.9.3.1
43739urease-3.5.1.5
43739lysine decarboxylase-4.1.1.18
43739ornithine decarboxylase-4.1.1.17
43739beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    43739C12:0ALDE / C14:0 3-OH / iso-C16:1I / Unknown ECL5.5310928
    43739C16:01.54
    43739C16:0 3OH1.47
    43739C18:06.49
    43739C18:1ω6c / C18:1ω7c65.92
    4373911-methyl C18:1ω7c10.54
    43739C18:1ω9c0.84
    4373910-methyl C19:02.15
    43739unknown ECL 18.846 / C19:1ω6c / C19:0&4.4218846
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA plates
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 2
  • incubation_oxygen: aerobic
  • library/peak naming table: TSBA6.1
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
43739Bark of the tree Cathormion umbellatumBangkokThailandTHAAsia
67771From bark of `Cathormion umbellatum`BangkokThailandTHAAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Bark

taxonmaps

  • @ref: 69479
  • File name: preview.99_8779.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_3216;97_5038;98_6424;99_8779&stattab=map
  • Last taxonomy: Paenibacillus cathormii subclade
  • 16S sequence: AB979873
  • Sequence Identity:
  • Total samples: 29
  • soil counts: 7
  • aquatic counts: 6
  • animal counts: 6
  • plant counts: 10

Sequence information

16S sequences

  • @ref: 43739
  • description: 16S rRNA gene sequence
  • accession: AB979873
  • database: nuccore

GC content

@refGC-contentmethod
4373952high performance liquid chromatography (HPLC)
6777152.0

External links

@ref: 43739

culture collection no.: KCTC 33251, TISTR 2282

literature

  • topic: Phylogeny
  • Pubmed-ID: 26675308
  • title: Paenibacillus cathormii sp. nov., isolated from tree bark.
  • authors: Sitdhipol J, Paek J, Sin Y, Park IS, Thamacharoensuk T, Wannissorn B, Tanasupawat S, Chang YH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000854
  • year: 2015

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43739Jaruwan Sitdhipol, Jayoung Paek, Yeseul Sin, In-Soon Park, Tanatip Thamacharoensuk, Bhusita Wannissorn, Somboon Tanasupawat, Young-Hyo ChangPaenibacillus cathormii sp. nov., isolated from tree bark10.1099/ijsem.0.000854IJSEM 66: 1187-1192 201626675308
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/