Name: Marinagarivorans algicola Z1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140894

Type strain:

Species: Marinagarivorans algicola

Strain Designation: Z1

Culture col. no.: ATCC BAA-2617, CICC 10859

NCBI tax ID(s): 1513270 (species)

Special Collections

Literature strains

Section

When using BacDive for research please cite our paper

Marinagarivorans algicola Z1 is a facultative anaerobe, heterotroph, Gram-negative bacterium that forms circular colonies and was isolated from The surface of marine algae Gelidium amansii collected from the coast of Rongcheng.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
heterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	[Gammaproteobacteria, not assigned to order]
	Family	[Gammaproteobacteria, not assigned to family]
	Genus	*Marinagarivorans*
	Species	**Marinagarivorans algicola**
	Full Scientific Name (LPSN)	Marinagarivorans algicola Guo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43726]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99

[Ref.: #43726]	Cell length	1.8-2.8 mm

[Ref.: #43726]	Cell width	0.9-1.2 µm

[Ref.: #43726]	Cell shape	rod-shaped

[Ref.: #43726]	Motility	yes

[Ref.: #43726]	Colony size	1-1.3 mm
[Ref.: #43726]	Colony color	Pale yellow
[Ref.: #43726]	Colony shape	circular
[Ref.: #43726]	Incubation period	2 days
[Ref.: #43726]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43726]

Culture medium

Marine agar (MA)

[Ref.: #43726]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43726]			growth	10-33 °C
[Ref.: #43726]			optimum	28-30 °C

	pH	Kind of pH		pH
[Ref.: #43726]			optimum	7-7.5
[Ref.: #43726]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43726]

Oxygen tolerance

facultative anaerobe

[Ref.: #43726]

Nutrition type

heterotroph

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.7

[Ref.: #43726]

Halophily / tolerance level

slightly halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #43726]	NaCl		growth	0.5-6	%(w/v)
[Ref.: #43726]	NaCl		optimum	2-3	%(w/v)
[Ref.: #43726]	NaCl	no	growth	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43726]	acetoacetate ChEBI	+	oxidation
[Ref.: #43726]	agar ChEBI	+	hydrolysis
[Ref.: #43726]	alginate ChEBI	-	hydrolysis
[Ref.: #43726]	amygdalin ChEBI	-	builds acid from
[Ref.: #43726]	arbutin ChEBI	-	builds acid from
[Ref.: #43726]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43726]	cellobiose ChEBI	+	builds acid from
[Ref.: #43726]	citrate ChEBI	-	carbon source
[Ref.: #43726]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43726]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43726]	D-fructose ChEBI	-	builds acid from
[Ref.: #43726]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #43726]	D-fucose ChEBI	-	builds acid from
[Ref.: #43726]	D-galactose ChEBI	-	builds acid from
[Ref.: #43726]	D-galacturonic acid ChEBI	+	oxidation
[Ref.: #43726]	D-glucose ChEBI	+	builds acid from
[Ref.: #43726]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43726]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43726]	D-mannose ChEBI	-	builds acid from
[Ref.: #43726]	D-ribose ChEBI	-	builds acid from
[Ref.: #43726]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43726]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43726]	D-xylose ChEBI	-	builds acid from
[Ref.: #43726]	erythritol ChEBI	-	builds acid from
[Ref.: #43726]	esculin ferric citrate	+	builds acid from
[Ref.: #43726]	galactitol ChEBI	-	builds acid from
[Ref.: #43726]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43726]	glucuronamide ChEBI	+	oxidation
[Ref.: #43726]	glycerol ChEBI	-	builds acid from
[Ref.: #43726]	glycogen ChEBI	+	builds acid from
[Ref.: #43726]	inulin ChEBI	-	builds acid from
[Ref.: #43726]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43726]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43726]	L-fucose ChEBI	-	builds acid from
[Ref.: #43726]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43726]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43726]	L-xylose ChEBI	-	builds acid from
[Ref.: #43726]	lactose ChEBI	-	builds acid from
[Ref.: #43726]	maltose ChEBI	+	builds acid from
[Ref.: #43726]	melezitose ChEBI	-	builds acid from
[Ref.: #43726]	melibiose ChEBI	-	builds acid from
[Ref.: #43726]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43726]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43726]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43726]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43726]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43726]	nitrate ChEBI	-	reduction
[Ref.: #43726]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43726]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43726]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43726]	raffinose ChEBI	-	builds acid from
[Ref.: #43726]	ribitol ChEBI	-	builds acid from
[Ref.: #43726]	salicin ChEBI	-	builds acid from
[Ref.: #43726]	sodium chloride ChEBI	+	required for growth
[Ref.: #43726]	starch ChEBI	+	builds acid from
[Ref.: #43726]	starch ChEBI	+	hydrolysis
[Ref.: #43726]	sucrose ChEBI	-	builds acid from
[Ref.: #43726]	trehalose ChEBI	-	builds acid from
[Ref.: #43726]	turanose ChEBI	-	builds acid from
[Ref.: #43726]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43726]	urea ChEBI	-	hydrolysis
[Ref.: #43726]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43726]	acetylspiramycin ChEBI	yes	30	µg (disc)
[Ref.: #43726]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43726]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43726]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #43726]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43726]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43726]	clindamycin ChEBI	yes	2	µg (disc)
[Ref.: #43726]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43726]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #43726]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43726]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43726]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43726]	penicillin ChEBI	yes	10	µg (disc)
[Ref.: #43726]	polymyxin b ChEBI	yes	300	µg (disc)
[Ref.: #43726]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43726]	sulfamethoxydiazine ChEBI	yes	5	µg (disc)
[Ref.: #43726]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43726]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #43726]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43726]	acetoin ChEBI	no
[Ref.: #43726]	hydrogen sulfide ChEBI	no
[Ref.: #43726]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Citrate test
[Ref.: #43726]		acetoin ChEBI	-
[Ref.: #43726]		citrate ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43726]	acid phosphatase	-	3.1.3.2
[Ref.: #43726]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43726]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43726]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43726]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43726]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43726]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43726]	beta-galactosidase	-	3.2.1.23
[Ref.: #43726]	beta-glucosidase	-	3.2.1.21
[Ref.: #43726]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43726]	catalase	-	1.11.1.6
[Ref.: #43726]	chymotrypsin	-	3.4.4.5
[Ref.: #43726]	cystine arylamidase	+	3.4.11.3
[Ref.: #43726]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43726]	esterase (C 4)	+
[Ref.: #43726]	esterase Lipase (C 8)	+
[Ref.: #43726]	gelatinase	+
[Ref.: #43726]	leucine arylamidase	+	3.4.11.1
[Ref.: #43726]	lipase (C 14)	-
[Ref.: #43726]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43726]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43726]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43726]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43726]	trypsin	-	3.4.21.4
[Ref.: #43726]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43726]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43726]

Fatty acid	Percentage
C16:1ω6c / C16:1ω7c	42.7
C18:1ω6c / C18:1ω7c	20.9
C16:0	19.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43726]	Sample type/isolated from	The surface of marine algae Gelidium amansii (Lamouroux) collected from the coast of Rongcheng
[Ref.: #43726]	Geographic location (country and/or sea, region)	Coast of Rongcheng
[Ref.: #43726]	Country	China
[Ref.: #43726]	Country ISO 3 Code	CHN
[Ref.: #43726]	Continent	Asia
[Ref.: #43726]	Geographic location	37.1210°/122.3950°
[Ref.: #43726]	Isolation date	2012-10-10
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast
#Host	#Algae	#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ659911 (>99% sequence identity) for Marinagarivorans algicola subclade from Microbeatlas

Aquatic Samples	4782
Soil Samples	110
Animal Samples	155
Plant Samples	42
Total Samples	5089

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43726]	Marinagarivorans algicola strain Z1 16S ribosomal RNA gene, partial sequence	KJ659911		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinagarivorans algicola Z1	GCA_001292705	contig	GenBank ENA	1513270 tax ID	*
[Ref.: #66792]	Marinagarivorans algicola Z1	2788499911	draft	JGI IMG/M	1513270 tax ID	*

[Ref.: #43726]

GC-content

45.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinagarivorans algicola Z1 NCBI: GCA_001292705
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	71.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	87.3

Availability in culture collections External links

[Ref.: #43726]

Culture collection no.

ATCC BAA-2617, CICC 10859

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae.	Guo LY, Li DQ, Sang J, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000925	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43726

Ling-Yun Guo, Dong-Qi Li, Jin Sang, Guan-Jun Chen, Zong-Jun Du: Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae. IJSEM 66: 1593 - 1599 2016 ( DOI 10.1099/ijsem.0.000925 , PubMed 26821539 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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