Marinagarivorans algicola (ATCC BAA-2617, CICC 10859, Z1)

Name: Marinagarivorans algicola (ATCC BAA-2617, CICC 10859, Z1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140894

Type strain

Strain Designation Z1

Culture col. no. ATCC BAA-2617 CICC 10859 Z1

NCBI tax ID(s) 1513270

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Marinagarivorans algicola Z1 is a facultative anaerobe, heterotroph, Gram-negative prokaryote that forms circular colonies and was isolated from The surface of marine algae Gelidium amansii collected from the coast of Rongcheng.

Gram-negative motile rod-shaped colony-forming facultative anaerobe heterotroph genome sequence 16S sequence

Name and taxonomic classification

SI-ID 28333

ATCC BAA-2617

@ref 20215

Last LPSN update 2025-12-16 10:03:43

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order [Gammaproteobacteria, not assigned to order]

Family [Gammaproteobacteria, not assigned to family]

Genus Marinagarivorans

Species Marinagarivorans algicola

Full scientific name Marinagarivorans algicola Guo et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43726	negative	1.8-2.8 mm	0.9-1.2 µm	rod-shaped
125439	negative					99

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43726	1-1.3 mm	Pale yellow	circular	2 days	Marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
43726	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43726	positive	growth	10-33
43726	positive	optimum	28-30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43726	positive	optimum	7-7.5
43726	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

43726

Oxygen tolerancefacultative anaerobe

Nutrition type

43726

Typeheterotroph

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43726		NaCl	positive	growth	0.5-6 %(w/v)
43726	slightly halophilic	NaCl	positive	optimum	2-3 %(w/v)
43726		NaCl		growth	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43726	13705 ChEBI	acetoacetate	+	oxidation
43726	2509 ChEBI	agar	+	hydrolysis
43726	58187 ChEBI	alginate	-	hydrolysis
43726	27613 ChEBI	amygdalin	-	builds acid from
43726	18305 ChEBI	arbutin	-	builds acid from
43726	85146 ChEBI	carboxymethylcellulose	+	hydrolysis
43726	17057 ChEBI	cellobiose	+	builds acid from
43726	16947 ChEBI	citrate	-	carbon source
43726	17108 ChEBI	D-arabinose	-	builds acid from
43726	18333 ChEBI	D-arabitol	-	builds acid from
43726	15824 ChEBI	D-fructose	-	builds acid from
43726	78697 ChEBI	D-fructose 6-phosphate	+	oxidation
43726	28847 ChEBI	D-fucose	-	builds acid from
43726	12936 ChEBI	D-galactose	-	builds acid from
43726	18024 ChEBI	D-galacturonic acid	+	oxidation
43726	17634 ChEBI	D-glucose	+	builds acid from
43726	62318 ChEBI	D-lyxose	-	builds acid from
43726	16899 ChEBI	D-mannitol	-	builds acid from
43726	16024 ChEBI	D-mannose	-	builds acid from
43726	16988 ChEBI	D-ribose	-	builds acid from
43726	17924 ChEBI	D-sorbitol	-	builds acid from
43726	16443 ChEBI	D-tagatose	-	builds acid from
43726	65327 ChEBI	D-xylose	-	builds acid from
43726	17113 ChEBI	erythritol	-	builds acid from
43726		esculin ferric citrate	+	builds acid from
43726	16813 ChEBI	galactitol	-	builds acid from
43726	28066 ChEBI	gentiobiose	-	builds acid from
43726	32323 ChEBI	glucuronamide	+	oxidation
43726	17754 ChEBI	glycerol	-	builds acid from
43726	28087 ChEBI	glycogen	+	builds acid from
43726	15443 ChEBI	inulin	-	builds acid from
43726	30849 ChEBI	L-arabinose	-	builds acid from
43726	18403 ChEBI	L-arabitol	-	builds acid from
43726	18287 ChEBI	L-fucose	-	builds acid from
43726	62345 ChEBI	L-rhamnose	-	builds acid from
43726	17266 ChEBI	L-sorbose	-	builds acid from
43726	65328 ChEBI	L-xylose	-	builds acid from
43726	17716 ChEBI	lactose	-	builds acid from
43726	17306 ChEBI	maltose	+	builds acid from
43726	6731 ChEBI	melezitose	-	builds acid from
43726	28053 ChEBI	melibiose	-	builds acid from
43726	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43726	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43726	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43726	17268 ChEBI	myo-inositol	-	builds acid from
43726	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43726	17632 ChEBI	nitrate	-	reduction
43726		potassium 2-dehydro-D-gluconate	-	builds acid from
43726		potassium 5-dehydro-D-gluconate	+	builds acid from
43726	32032 ChEBI	potassium gluconate	-	builds acid from
43726	16634 ChEBI	raffinose	-	builds acid from
43726	15963 ChEBI	ribitol	-	builds acid from
43726	17814 ChEBI	salicin	-	builds acid from
43726	26710 ChEBI	sodium chloride	+	required for growth
43726	28017 ChEBI	starch	+	builds acid from
43726	28017 ChEBI	starch	+	hydrolysis
43726	17992 ChEBI	sucrose	-	builds acid from
43726	27082 ChEBI	trehalose	-	builds acid from
43726	32528 ChEBI	turanose	-	builds acid from
43726	53426 ChEBI	tween 80	+	hydrolysis
43726	16199 ChEBI	urea	-	hydrolysis
43726	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43726	31168	acetylspiramycin	30 µg (disc)
43726	28971	ampicillin	10 µg (disc)
43726	3393	carbenicillin	100 µg (disc)
43726	204928	cefotaxime	30 µg (disc)
43726	29007	ceftriaxone	30 µg (disc)
43726	17698	chloramphenicol	30 µg (disc)
43726	3745	clindamycin	2 µg (disc)
43726	48923	erythromycin	15 µg (disc)
43726	6472	lincomycin		2 µg (disc)
43726	7507	neomycin	30 µg (disc)
43726	100246	norfloxacin	10 µg (disc)
43726	7731	ofloxacin	5 µg (disc)
43726	17334	penicillin	10 µg (disc)
43726	8309	polymyxin b	300 µg (disc)
43726	28077	rifampicin	5 µg (disc)
43726	53727	sulfamethoxydiazine	5 µg (disc)
43726	27902	tetracycline		30 µg (disc)
43726	28864	tobramycin	10 µg (disc)
43726	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
43726	15688 ChEBI	acetoin
43726	16136 ChEBI	hydrogen sulfide
43726	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Citrate test
43726	15688 ChEBI	acetoin	-
43726	16947 ChEBI	citrate		-

Enzymes

@ref	Value	Activity	Ec
43726	acid phosphatase	-	3.1.3.2
43726	alkaline phosphatase	+	3.1.3.1
43726	alpha-galactosidase	-	3.2.1.22
43726	alpha-glucosidase	-	3.2.1.20
43726	alpha-mannosidase	-	3.2.1.24
43726	arginine dihydrolase	-	3.5.3.6
43726	beta-D-fucosidase	-	3.2.1.38
43726	beta-galactosidase	-	3.2.1.23
43726	beta-glucosidase	-	3.2.1.21
43726	beta-glucuronidase	-	3.2.1.31
43726	catalase	-	1.11.1.6
43726	chymotrypsin	-	3.4.4.5
43726	cystine arylamidase	+	3.4.11.3
43726	cytochrome oxidase	+	1.9.3.1
43726	esterase (C 4)	+
43726	esterase Lipase (C 8)	+
43726	gelatinase	+
43726	leucine arylamidase	+	3.4.11.1
43726	lipase (C 14)	-
43726	lysine decarboxylase	-	4.1.1.18
43726	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43726	naphthol-AS-BI-phosphohydrolase	+
43726	ornithine decarboxylase	-	4.1.1.17
43726	trypsin	-	3.4.21.4
43726	tryptophan deaminase	-	4.1.99.1
43726	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43726

Fatty acid	Percentage
C16:1ω6c / C16:1ω7c	42.7
C18:1ω6c / C18:1ω7c	20.9
C16:0	19.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast
#Host	#Algae	#Red algae

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
43726	The surface of marine algae Gelidium amansii (Lamouroux) collected from the coast of Rongcheng	Coast of Rongcheng	China	CHN	Asia	37.121	122.395 37.121/122.395	2012-10-10

Taxonmaps

69479

Global distribution of 16S sequence KJ659911 (>99% sequence identity) for Marinagarivorans algicola subclade from Microbeatlas

Aquatic Samples	4782
Soil Samples	110
Animal Samples	155
Plant Samples	42
Total Samples	5089

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM129270v1 assembly for Marinagarivorans algicola Z1	contig	GCA_001292705	1513270.5	2788499911	1513270	57.12

16S sequences

@ref	Description	Accession	Database
43726	Marinagarivorans algicola strain Z1 16S ribosomal RNA gene, partial sequence	KJ659911

GC content

@ref	GC-content (mol%)	Method
43726	45.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinagarivorans algicola Z1
NCBI: GCA_001292705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	71.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.30	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae.	Guo LY, Li DQ, Sang J, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000925	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43726	Ling-Yun Guo, Dong-Qi Li, Jin Sang, Guan-Jun Chen, Zong-Jun Du: Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae. IJSEM 66: 1593 - 1599 2016 ( DOI 10.1099/ijsem.0.000925 , PubMed 26821539 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinagarivorans algicola (ATCC BAA-2617, CICC 10859, Z1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile?

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001292705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media

Fatty acid profile