Name: Lysobacter terricola 5GH218-14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140893

Type strain:

Species: Lysobacter terricola

Strain Designation: 5GH218-14

Culture col. no.: KACC 16954, JCM 30862

Strain history: S.-W. Kwon; KACC, South Korea; 5GH18-14.

NCBI tax ID(s): 1743261 (species)

Special Collections

Section

Lysobacter terricola 5GH218-14 is an aerobe, Gram-negative, motile bacterium that forms irregular colonies and was isolated from Greenhouse soil in the Yangpyeong region.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter terricola**
	Full Scientific Name (LPSN)	Lysobacter terricola Kim et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43725]	Gram stain	negative

[Ref.: #43725]	Cell length	1.5-2 µm

[Ref.: #43725]	Cell width	0.4-0.5 µm

[Ref.: #43725]	Cell shape	rod-shaped

[Ref.: #43725]	Motility	yes

[Ref.: #43725]	Colony color	Yellow
[Ref.: #43725]	Colony shape	irregular
[Ref.: #43725]	Cultivation medium used	R2A agar

[Ref.: #43725]	Pigment production	no
[Ref.: #43725]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

		Temperature
[Ref.: #43725]	growth	10-33 °C
[Ref.: #43725]	optimum	28-30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #43725]			optimum	7
[Ref.: #43725]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43725]		NaCl		growth	0	%(w/v)
[Ref.: #43725]		NaCl	no	growth	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43725]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43725]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43725]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43725]	adipate ChEBI	-	assimilation
[Ref.: #43725]	casein	+	hydrolysis
[Ref.: #43725]	cellulose ChEBI	-	hydrolysis
[Ref.: #43725]	chitin ChEBI	-	hydrolysis
[Ref.: #43725]	D-glucose ChEBI	-	assimilation
[Ref.: #43725]	D-mannitol ChEBI	-	assimilation
[Ref.: #43725]	D-mannose ChEBI	-	assimilation
[Ref.: #43725]	D-ribose ChEBI	-	assimilation
[Ref.: #43725]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43725]	decanoate ChEBI	-	assimilation
[Ref.: #43725]	dna ChEBI	-	hydrolysis
[Ref.: #43725]	esculin ChEBI	+	hydrolysis
[Ref.: #43725]	gelatin ChEBI	+	hydrolysis
[Ref.: #43725]	glucose ChEBI	-	fermentation
[Ref.: #43725]	glycogen ChEBI	+	assimilation
[Ref.: #43725]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43725]	itaconate ChEBI	-	assimilation
[Ref.: #43725]	L-alanine ChEBI	-	assimilation
[Ref.: #43725]	L-arabinose ChEBI	-	assimilation
[Ref.: #43725]	L-fucose ChEBI	-	assimilation
[Ref.: #43725]	L-histidine ChEBI	-	assimilation
[Ref.: #43725]	L-proline ChEBI	-	assimilation
[Ref.: #43725]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43725]	L-serine ChEBI	-	assimilation
[Ref.: #43725]	lactate ChEBI	-	assimilation
[Ref.: #43725]	malate ChEBI	-	assimilation
[Ref.: #43725]	maltose ChEBI	-	assimilation
[Ref.: #43725]	melibiose ChEBI	-	assimilation
[Ref.: #43725]	myo-inositol ChEBI	-	assimilation
[Ref.: #43725]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43725]	nitrate ChEBI	-	reduction
[Ref.: #43725]	phenylacetate ChEBI	-	assimilation
[Ref.: #43725]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #43725]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #43725]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43725]	propionate ChEBI	+	assimilation
[Ref.: #43725]	salicin ChEBI	-	assimilation
[Ref.: #43725]	sodium acetate ChEBI	+	assimilation
[Ref.: #43725]	sodium citrate ChEBI	-	assimilation
[Ref.: #43725]	sodium malonate ChEBI	-	assimilation
[Ref.: #43725]	starch ChEBI	-	hydrolysis
[Ref.: #43725]	suberic acid ChEBI	-	assimilation
[Ref.: #43725]	sucrose ChEBI	-	assimilation
[Ref.: #43725]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43725]	tyrosine ChEBI	+	hydrolysis
[Ref.: #43725]	valerate ChEBI	-	assimilation
[Ref.: #43725]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43725]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43725]	acid phosphatase	+	3.1.3.2
[Ref.: #43725]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43725]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43725]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43725]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43725]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43725]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43725]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43725]	beta-galactosidase	+	3.2.1.23
[Ref.: #43725]	beta-glucosidase	-	3.2.1.21
[Ref.: #43725]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43725]	catalase	-	1.11.1.6
[Ref.: #43725]	cystine arylamidase	-	3.4.11.3
[Ref.: #43725]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43725]	esterase (C 4)	+
[Ref.: #43725]	esterase Lipase (C 8)	-
[Ref.: #43725]	leucine arylamidase	+	3.4.11.1
[Ref.: #43725]	lipase (C 14)	-
[Ref.: #43725]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43725]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43725]	trypsin	-	3.4.21.4
[Ref.: #43725]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43725]

Fatty acid	Percentage
C18:1ω7c	49.1
C16:1ω7c / C15:0 iso 2OH	17.43
C16:0	14.29
C10:0 3OH	8.29
C10:0	5.09
C19:1ω6c / unknown 18.846	1.23
C18:0	1.14

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43725]	Sample type/isolated from	Greenhouse soil in the Yangpyeong region
[Ref.: #43725]	Geographic location (country and/or sea, region)	Yangpyeong region, Gyeonggi province
[Ref.: #43725]	Country	Republic of Korea
[Ref.: #43725]	Country ISO 3 Code	KOR
[Ref.: #43725]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Greenhouse soil in the Yangpyeong region
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gyeonggi Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Greenhouse
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR869779 (>99% sequence identity) for Lysobacter from Microbeatlas

Aquatic Samples	5500
Soil Samples	37305
Animal Samples	3985
Plant Samples	6898
Total Samples	53688

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43725]	Lysobacter terricola strain 5GH18-14 16S ribosomal RNA gene, partial sequence	KR869779		GenBank ENA

[Ref.: #43725]	GC-content	65.9 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	65.9 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43725]

Culture collection no.

KACC 16954, JCM 30862

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter terricola sp. nov., isolated from greenhouse soil.	Kim SJ, Ahn JH, Weon HY, Hong SB, Seok SJ, Kim JS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.000893	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43725

Soo-Jin Kim, Jae-Hyung Ahn, Hang-Yeon Weon, Seung-Beom Hong, Soon-Ja Seok, Jeong-Seon Kim, Soon-Wo Kwon: Lysobacter terricola sp. nov., isolated from greenhouse soil. IJSEM 66: 1401 - 1406 2016 ( DOI 10.1099/ijsem.0.000893 , PubMed 26763907 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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