Strain identifier

BacDive ID: 140894

Type strain: Yes

Species: Marinagarivorans algicola

Strain Designation: Z1

NCBI tax ID(s): 1513270 (species)

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General

@ref: 43726

BacDive-ID: 140894

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, heterotroph, Gram-negative, motile, rod-shaped, colony-forming

description: Marinagarivorans algicola Z1 is a facultative anaerobe, heterotroph, Gram-negative bacterium that forms circular colonies and was isolated from The surface of marine algae Gelidium amansii collected from the coast of Rongcheng.

NCBI tax id

  • NCBI tax id: 1513270
  • Matching level: species

doi: 10.13145/bacdive140894.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Gammaproteobacteria, not assigned to order
  • family: Gammaproteobacteria, not assigned to family
  • genus: Marinagarivorans
  • species: Marinagarivorans algicola
  • full scientific name: Marinagarivorans algicola Guo et al. 2016

@ref: 43726

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Gammaproteobacteria, not assigned to order

family: Gammaproteobacteria, not assigned to family

genus: Marinagarivorans

species: Marinagarivorans algicola

strain designation: Z1

type strain: yes

Morphology

cell morphology

  • @ref: 43726
  • gram stain: negative
  • cell length: 1.8-2.8 mm
  • cell width: 0.9-1.2 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43726
  • colony size: 1-1.3 mm
  • colony color: Pale yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Marine agar 2216

Culture and growth conditions

culture medium

  • @ref: 43726
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43726positivegrowth10-33
43726positiveoptimum28-30mesophilic

culture pH

@refabilitytypepHPH range
43726positivegrowth6.5-8.5alkaliphile
43726positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43726
  • oxygen tolerance: facultative anaerobe

nutrition type

  • @ref: 43726
  • type: heterotroph

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43726NaClpositivegrowth0.5-6 %(w/v)
43726NaClpositiveoptimum2-3 %(w/v)slightly halophilic
43726NaClnogrowth0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4372627613amygdalin-builds acid from
4372618305arbutin-builds acid from
4372615963ribitol-builds acid from
4372617108D-arabinose-builds acid from
4372618333D-arabitol-builds acid from
4372615824D-fructose-builds acid from
4372628847D-fucose-builds acid from
4372612936D-galactose-builds acid from
4372662318D-lyxose-builds acid from
4372616899D-mannitol-builds acid from
4372616024D-mannose-builds acid from
4372616988D-ribose-builds acid from
4372617924D-sorbitol-builds acid from
4372616443D-tagatose-builds acid from
4372665327D-xylose-builds acid from
4372616813galactitol-builds acid from
4372617113erythritol-builds acid from
4372628066gentiobiose-builds acid from
4372617754glycerol-builds acid from
4372617268myo-inositol-builds acid from
4372615443inulin-builds acid from
4372630849L-arabinose-builds acid from
4372618403L-arabitol-builds acid from
4372618287L-fucose-builds acid from
4372662345L-rhamnose-builds acid from
4372617266L-sorbose-builds acid from
4372665328L-xylose-builds acid from
4372617716lactose-builds acid from
437266731melezitose-builds acid from
4372628053melibiose-builds acid from
43726320061methyl alpha-D-glucopyranoside-builds acid from
4372643943methyl alpha-D-mannoside-builds acid from
4372674863methyl beta-D-xylopyranoside-builds acid from
43726506227N-acetylglucosamine-builds acid from
43726potassium 2-dehydro-D-gluconate-builds acid from
4372632032potassium gluconate-builds acid from
4372616634raffinose-builds acid from
4372617814salicin-builds acid from
4372617992sucrose-builds acid from
4372627082trehalose-builds acid from
4372632528turanose-builds acid from
4372617151xylitol-builds acid from
4372616947citrate-carbon source
4372658187alginate-hydrolysis
4372616199urea-hydrolysis
4372617632nitrate-reduction
4372617057cellobiose+builds acid from
4372617634D-glucose+builds acid from
43726esculin ferric citrate+builds acid from
4372628087glycogen+builds acid from
4372617306maltose+builds acid from
43726potassium 5-dehydro-D-gluconate+builds acid from
4372628017starch+builds acid from
437262509agar+hydrolysis
4372685146carboxymethylcellulose+hydrolysis
4372628017starch+hydrolysis
4372653426tween 80+hydrolysis
4372613705acetoacetate+oxidation
4372678697D-fructose 6-phosphate+oxidation
4372618024D-galacturonic acid+oxidation
4372632323glucuronamide+oxidation
4372626710sodium chloride+required for growth

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
43726100246norfloxacinyesyes10 µg (disc)
4372617698chloramphenicolyesyes30 µg (disc)
437267507neomycinyesyes30 µg (disc)
437268309polymyxin byesyes300 µg (disc)
4372628971ampicillinyesyes10 µg (disc)
4372648923erythromycinyesyes15 µg (disc)
4372628001vancomycinyesyes30 µg (disc)
4372629007ceftriaxoneyesyes30 µg (disc)
43726204928cefotaximeyesyes30 µg (disc)
437263393carbenicillinyesyes100 µg (disc)
4372617334penicillinyesyes10 µg (disc)
437263745clindamycinyesyes2 µg (disc)
4372653727sulfamethoxydiazineyesyes5 µg (disc)
4372631168acetylspiramycinyesyes30 µg (disc)
4372628077rifampicinyesyes5 µg (disc)
4372628864tobramycinyesyes10 µg (disc)
437267731ofloxacinyesyes5 µg (disc)
4372627902tetracyclineyesyes30 µg (disc)
437266472lincomycinyesyes2 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
4372615688acetoinno
4372616136hydrogen sulfideno
4372635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testcitrate test
4372615688acetoin-
4372616947citrate-

enzymes

@refvalueactivityec
43726cytochrome oxidase+1.9.3.1
43726catalase-1.11.1.6
43726alkaline phosphatase+3.1.3.1
43726esterase (C 4)+
43726esterase Lipase (C 8)+
43726leucine arylamidase+3.4.11.1
43726valine arylamidase+
43726naphthol-AS-BI-phosphohydrolase+
43726cystine arylamidase+3.4.11.3
43726lipase (C 14)-
43726acid phosphatase-3.1.3.2
43726trypsin-3.4.21.4
43726chymotrypsin-3.4.4.5
43726beta-galactosidase-3.2.1.23
43726alpha-glucosidase-3.2.1.20
43726beta-glucosidase-3.2.1.21
43726alpha-mannosidase-3.2.1.24
43726beta-D-fucosidase-3.2.1.38
43726alpha-galactosidase-3.2.1.22
43726beta-glucuronidase-3.2.1.31
43726N-acetyl-beta-glucosaminidase-3.2.1.52
43726arginine dihydrolase-3.5.3.6
43726lysine decarboxylase-4.1.1.18
43726ornithine decarboxylase-4.1.1.17
43726tryptophan deaminase-4.1.99.1
43726gelatinase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43726C16:019.1
    43726C16:1ω6c / C16:1ω7c42.7
    43726C18:1ω6c / C18:1ω7c20.9
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine broth 2216 supplemented with 0.2 % (w/v) starch
  • agar/liquid: liquid
  • incubation temperature: 28
  • incubation time: 2
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • instrument: Agilent 6890N
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 43726
  • sample type: The surface of marine algae Gelidium amansii (Lamouroux) collected from the coast of Rongcheng
  • geographic location: Coast of Rongcheng
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 37.121
  • longitude: 122.395
  • isolation date: 2012-10-10

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Coast
#Host#Algae#Red algae

taxonmaps

  • @ref: 69479
  • File name: preview.99_3932.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_2003;97_2412;98_2982;99_3932&stattab=map
  • Last taxonomy: Marinagarivorans algicola subclade
  • 16S sequence: KJ659911
  • Sequence Identity:
  • Total samples: 5089
  • soil counts: 110
  • aquatic counts: 4782
  • animal counts: 155
  • plant counts: 42

Sequence information

16S sequences

  • @ref: 43726
  • description: 16S rRNA gene sequence
  • accession: KJ659911
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinagarivorans algicola Z1GCA_001292705contigncbi1513270
66792Marinagarivorans algicola Z12788499911draftimg1513270

GC content

  • @ref: 43726
  • GC-content: 45.1
  • method: genome sequence analysis

External links

@ref: 43726

culture collection no.: ATCC BAA 2617, CICC 10859

literature

  • topic: Phylogeny
  • Pubmed-ID: 26821539
  • title: Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae.
  • authors: Guo LY, Li DQ, Sang J, Chen GJ, Du ZJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000925
  • year: 2016

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43726Ling-Yun Guo, Dong-Qi Li, Jin Sang, Guan-Jun Chen, Zong-Jun DuMarinagarivorans algicola gen. nov., sp. nov., isolated from marine algae10.1099/ijsem.0.000925IJSEM 66: 1593-1599 201626821539
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/