Name: Bacillus zhangzhouensis DW5-4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140879

Type strain:

Species: Bacillus zhangzhouensis

Strain Designation: DW5-4

Culture col. no.: MCCC 1A08372, LMG 27144, KCTC 33531

NCBI tax ID(s): 1178540 (species)

Special Collections

Section

Bacillus zhangzhouensis DW5-4 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from The aquaculture water of a shrimp farm.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus zhangzhouensis**
	Full Scientific Name (LPSN)	Bacillus zhangzhouensis Liu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43705]	Gram stain	positive

[Ref.: #43705]	Cell length	1.8-2 µm

[Ref.: #43705]	Cell width	0.5-0.6 µm

[Ref.: #43705]	Cell shape	rod-shaped

[Ref.: #43705]	Motility	yes

[Ref.: #43705]	Colony size	2-3 mm
[Ref.: #43705]	Colony color	Cream-white
[Ref.: #43705]	Colony shape	circular
[Ref.: #43705]	Incubation period	2 days
[Ref.: #43705]	Cultivation medium used	Luria Bertani agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43705]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43705]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43705]			growth	8-45 °C
[Ref.: #43705]			optimum	30-37 °C

	pH	Kind of pH		pH
[Ref.: #43705]			optimum	6-9
[Ref.: #43705]			growth	5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43705]

Oxygen tolerance

obligate aerobe

[Ref.: #43705]	Spore description	central elliptical endospore
[Ref.: #43705]	Type of spore	endospore
[Ref.: #43705]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43705]		NaCl		growth	0-12	%(w/v)
[Ref.: #43705]		NaCl		optimum	1-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43705]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43705]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43705]	adipate ChEBI	-	assimilation
[Ref.: #43705]	amygdalin ChEBI	+	builds acid from
[Ref.: #43705]	amygdalin ChEBI	+	fermentation
[Ref.: #43705]	arabinose ChEBI	+	fermentation
[Ref.: #43705]	arbutin ChEBI	+	builds acid from
[Ref.: #43705]	cellobiose ChEBI	+	builds acid from
[Ref.: #43705]	citrate ChEBI	+	assimilation
[Ref.: #43705]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43705]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43705]	D-fructose ChEBI	+	builds acid from
[Ref.: #43705]	D-fucose ChEBI	-	builds acid from
[Ref.: #43705]	D-galactose ChEBI	+	builds acid from
[Ref.: #43705]	D-glucose ChEBI	+	assimilation
[Ref.: #43705]	D-glucose ChEBI	+	builds acid from
[Ref.: #43705]	D-glucose ChEBI	+	fermentation
[Ref.: #43705]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43705]	D-mannitol ChEBI	+	assimilation
[Ref.: #43705]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43705]	D-mannose ChEBI	+	assimilation
[Ref.: #43705]	D-mannose ChEBI	+	builds acid from
[Ref.: #43705]	D-ribose ChEBI	+	builds acid from
[Ref.: #43705]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43705]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43705]	D-xylose ChEBI	+	builds acid from
[Ref.: #43705]	decanoate ChEBI	-	assimilation
[Ref.: #43705]	erythritol ChEBI	-	builds acid from
[Ref.: #43705]	esculin ChEBI	+	builds acid from
[Ref.: #43705]	galactitol ChEBI	-	builds acid from
[Ref.: #43705]	gelatin ChEBI	+	hydrolysis
[Ref.: #43705]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43705]	gluconate ChEBI	-	builds acid from
[Ref.: #43705]	glycerol ChEBI	+	builds acid from
[Ref.: #43705]	glycogen ChEBI	-	builds acid from
[Ref.: #43705]	inulin ChEBI	-	builds acid from
[Ref.: #43705]	L-arabinose ChEBI	+	assimilation
[Ref.: #43705]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43705]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43705]	L-fucose ChEBI	-	builds acid from
[Ref.: #43705]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43705]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43705]	L-xylose ChEBI	-	builds acid from
[Ref.: #43705]	lactose ChEBI	-	builds acid from
[Ref.: #43705]	malate ChEBI	+	assimilation
[Ref.: #43705]	maltose ChEBI	-	assimilation
[Ref.: #43705]	maltose ChEBI	-	builds acid from
[Ref.: #43705]	mannitol ChEBI	+	fermentation
[Ref.: #43705]	melezitose ChEBI	-	builds acid from
[Ref.: #43705]	melibiose ChEBI	+	builds acid from
[Ref.: #43705]	melibiose ChEBI	+	fermentation
[Ref.: #43705]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43705]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43705]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #43705]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43705]	myo-inositol ChEBI	-	fermentation
[Ref.: #43705]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43705]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43705]	nitrate ChEBI	-	reduction
[Ref.: #43705]	phenylacetate ChEBI	-	assimilation
[Ref.: #43705]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43705]	raffinose ChEBI	-	builds acid from
[Ref.: #43705]	rhamnose ChEBI	-	fermentation
[Ref.: #43705]	ribitol ChEBI	-	builds acid from
[Ref.: #43705]	salicin ChEBI	+	builds acid from
[Ref.: #43705]	sodium citrate ChEBI	+	assimilation
[Ref.: #43705]	sorbitol ChEBI	-	fermentation
[Ref.: #43705]	starch ChEBI	-	builds acid from
[Ref.: #43705]	sucrose ChEBI	+	builds acid from
[Ref.: #43705]	sucrose ChEBI	+	fermentation
[Ref.: #43705]	trehalose ChEBI	+	builds acid from
[Ref.: #43705]	turanose ChEBI	-	builds acid from
[Ref.: #43705]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43705]	acetoin ChEBI	yes
[Ref.: #43705]	hydrogen sulfide ChEBI	no
[Ref.: #43705]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43705]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43705]	acid phosphatase	+	3.1.3.2
[Ref.: #43705]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43705]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43705]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43705]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43705]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43705]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #43705]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43705]	beta-galactosidase	+	3.2.1.23
[Ref.: #43705]	beta-glucosidase	+	3.2.1.21
[Ref.: #43705]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43705]	catalase	+	1.11.1.6
[Ref.: #43705]	cystine aminopeptidase	-	3.4.11.3
[Ref.: #43705]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43705]	esterase (C 4)	+
[Ref.: #43705]	esterase Lipase (C 8)	+
[Ref.: #43705]	gelatinase	+
[Ref.: #43705]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #43705]	lipase (C 14)	+/-
[Ref.: #43705]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43705]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43705]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43705]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43705]	trypsin	-	3.4.21.4
[Ref.: #43705]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43705]	urease	+	3.5.1.5
[Ref.: #43705]	valine aminopeptidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43705]	Sample type/isolated from	The aquaculture water of a shrimp farm
[Ref.: #43705]	Geographic location (country and/or sea, region)	Xiapu County, Zhangzhou city
[Ref.: #43705]	Country	China
[Ref.: #43705]	Country ISO 3 Code	CHN
[Ref.: #43705]	Continent	Asia
[Ref.: #43705]	Geographic location	24.0200°/117.8200°
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	-
#Host	#Arthropoda	#Crustacea

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX680133 (>99% sequence identity) for Bacillus from Microbeatlas

Aquatic Samples	3497
Soil Samples	7187
Animal Samples	6743
Plant Samples	2902
Total Samples	20329

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43705]	Bacillus zhangzhouensis strain MCCC 1A08372 16S ribosomal RNA gene, partial sequence	JX680133		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus zhangzhouensis DW5-4	GCA_000715205	contig	GenBank ENA	1178540 tax ID	*
[Ref.: #66792]	Bacillus zhangzhouensis DW5-4	2585427675	draft	JGI IMG/M	1178540 tax ID	*

[Ref.: #43705]

GC-content

41.4 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #43705]

Culture collection no.

MCCC 1A08372, LMG 27144, KCTC 33531

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.	Liu Y, Lai Q, Du J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000856	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43705

Yang Liu, Qiliang Lai, Juan Du, Zongze Shao: Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.. IJSEM 66: 1193 - 1199 2016 ( DOI 10.1099/ijsem.0.000856 , PubMed 26705002 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bacillus zhangzhouensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF