Strain identifier

BacDive ID: 140879

Type strain: Yes

Species: Bacillus zhangzhouensis

Strain Designation: DW5-4

NCBI tax ID(s): 1178540 (species)

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General

@ref: 43705

BacDive-ID: 140879

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, Gram-positive, motile, rod-shaped, colony-forming

description: Bacillus zhangzhouensis DW5-4 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from The aquaculture water of a shrimp farm.

NCBI tax id

  • NCBI tax id: 1178540
  • Matching level: species

doi: 10.13145/bacdive140879.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus zhangzhouensis
  • full scientific name: Bacillus zhangzhouensis Liu et al. 2016

@ref: 43705

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus zhangzhouensis

strain designation: DW5-4

type strain: yes

Morphology

cell morphology

  • @ref: 43705
  • gram stain: positive
  • cell length: 1.8-2 µm
  • cell width: 0.5-0.6 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43705
  • colony size: 2-3 mm
  • colony color: Cream-white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Luria Bertani agar

Culture and growth conditions

culture medium

  • @ref: 43705
  • name: LB (Luria-Bertani) MEDIUM
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43705positivegrowth8-45
43705positiveoptimum30-37mesophilic

culture pH

@refabilitytypepHPH range
43705positivegrowth5-11alkaliphile
43705positiveoptimum6-9

Physiology and metabolism

oxygen tolerance

  • @ref: 43705
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 43705
  • spore description: central elliptical endospore
  • type of spore: endospore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
43705NaClpositivegrowth0-12 %(w/v)
43705NaClpositiveoptimum1-3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4370517128adipate-assimilation
4370527689decanoate-assimilation
4370517306maltose-assimilation
4370518401phenylacetate-assimilation
43705168082-dehydro-D-gluconate-builds acid from
43705581435-dehydro-D-gluconate-builds acid from
4370515963ribitol-builds acid from
4370517108D-arabinose-builds acid from
4370518333D-arabitol-builds acid from
4370528847D-fucose-builds acid from
4370562318D-lyxose-builds acid from
4370517924D-sorbitol-builds acid from
4370516813galactitol-builds acid from
4370517113erythritol-builds acid from
4370524265gluconate-builds acid from
4370528087glycogen-builds acid from
4370517268myo-inositol-builds acid from
4370515443inulin-builds acid from
4370518403L-arabitol-builds acid from
4370518287L-fucose-builds acid from
4370562345L-rhamnose-builds acid from
4370517266L-sorbose-builds acid from
4370565328L-xylose-builds acid from
4370517716lactose-builds acid from
4370517306maltose-builds acid from
437056731melezitose-builds acid from
4370543943methyl alpha-D-mannoside-builds acid from
4370574863methyl beta-D-xylopyranoside-builds acid from
4370537657methyl D-glucoside-builds acid from
4370516634raffinose-builds acid from
4370528017starch-builds acid from
4370532528turanose-builds acid from
4370517151xylitol-builds acid from
4370517268myo-inositol-fermentation
4370526546rhamnose-fermentation
4370530911sorbitol-fermentation
4370517632nitrate-reduction
4370516947citrate+assimilation
4370517634D-glucose+assimilation
4370516899D-mannitol+assimilation
4370516024D-mannose+assimilation
4370530849L-arabinose+assimilation
4370525115malate+assimilation
43705506227N-acetylglucosamine+assimilation
4370532032potassium gluconate+assimilation
4370553258sodium citrate+assimilation
4370527613amygdalin+builds acid from
4370518305arbutin+builds acid from
4370517057cellobiose+builds acid from
4370515824D-fructose+builds acid from
4370512936D-galactose+builds acid from
4370517634D-glucose+builds acid from
4370516899D-mannitol+builds acid from
4370516024D-mannose+builds acid from
4370516988D-ribose+builds acid from
4370516443D-tagatose+builds acid from
4370565327D-xylose+builds acid from
437054853esculin+builds acid from
4370528066gentiobiose+builds acid from
4370517754glycerol+builds acid from
4370530849L-arabinose+builds acid from
4370528053melibiose+builds acid from
43705506227N-acetylglucosamine+builds acid from
4370517814salicin+builds acid from
4370517992sucrose+builds acid from
4370527082trehalose+builds acid from
4370527613amygdalin+fermentation
4370522599arabinose+fermentation
4370517634D-glucose+fermentation
4370529864mannitol+fermentation
4370528053melibiose+fermentation
4370517992sucrose+fermentation
437055291gelatin+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
4370516136hydrogen sulfideno
4370535581indoleno
4370515688acetoinyes

metabolite tests

  • @ref: 43705
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
43705alkaline phosphatase+3.1.3.1
43705acid phosphatase+3.1.3.2
43705esterase (C 4)+
43705esterase Lipase (C 8)+
43705leucine aminopeptidase+3.4.1.1
43705naphthol-AS-BI-phosphohydrolase+
43705alpha-chymotrypsin+3.4.21.1
43705beta-galactosidase+3.2.1.23
43705beta-glucosidase+3.2.1.21
43705alpha-mannosidase+/-3.2.1.24
43705lipase (C 14)+/-
43705valine aminopeptidase+/-
43705alpha-fucosidase-3.2.1.51
43705alpha-galactosidase-3.2.1.22
43705alpha-glucosidase-3.2.1.20
43705beta-glucuronidase-3.2.1.31
43705N-acetyl-beta-glucosaminidase-3.2.1.52
43705trypsin-3.4.21.4
43705cystine aminopeptidase-3.4.11.3
43705arginine dihydrolase+3.5.3.6
43705catalase+1.11.1.6
43705cytochrome oxidase+1.9.3.1
43705urease+3.5.1.5
43705gelatinase+
43705lysine decarboxylase-4.1.1.18
43705ornithine decarboxylase-4.1.1.17
43705tryptophan deaminase-4.1.99.1

Isolation, sampling and environmental information

isolation

  • @ref: 43705
  • sample type: The aquaculture water of a shrimp farm
  • geographic location: Xiapu County, Zhangzhou city
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 24.02
  • longitude: 117.82

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Environmental#Aquatic
#Host#Arthropoda#Crustacea

taxonmaps

  • @ref: 69479
  • File name: preview.99_885.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_607;98_698;99_885&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: JX680133
  • Sequence Identity:
  • Total samples: 20329
  • soil counts: 7187
  • aquatic counts: 3497
  • animal counts: 6743
  • plant counts: 2902

Sequence information

16S sequences

  • @ref: 43705
  • description: 16S rRNA gene sequence
  • accession: JX680133
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus zhangzhouensis DW5-4GCA_000715205contigncbi1178540
66792Bacillus zhangzhouensis DW5-42585427675draftimg1178540

GC content

  • @ref: 43705
  • GC-content: 41.4
  • method: genome sequence analysis

External links

@ref: 43705

culture collection no.: MCCC 1A08372, LMG 27144, KCTC 33531

literature

  • topic: Phylogeny
  • Pubmed-ID: 26705002
  • title: Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.
  • authors: Liu Y, Lai Q, Du J, Shao Z
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000856
  • year: 2015

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43705Yang Liu, Qiliang Lai, Juan Du, Zongze ShaoBacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.10.1099/ijsem.0.000856IJSEM 66: 1193-1199 201626705002
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/